RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SNRNP48Q6IEG0 339 aaKnown RBP16.22■□□□□ 0.19
CLN3-235ENST00000568497 CCDC144CPQ8IYA2 1237 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 GMCL1Q96IK5 515 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 CNNM2Q9H8M5 875 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 FEM1BQ9UK73 627 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 ADAMTS5Q9UNA0 930 aa16.22■□□□□ 0.19
CLN3-235ENST00000568497 PCP11498 1178 aaKnown RBP16.21■□□□□ 0.19
CLN3-235ENST00000568497 COPB2P35606 906 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 STAT3P40763 770 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 ZNF543Q08ER8 600 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 GNASQ5JWF2 1037 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 SYDE2Q5VT97 1194 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 CMTR1Q8N1G2 835 aaKnown RBP16.21■□□□□ 0.19
CLN3-235ENST00000568497 IGDCC4Q8TDY8 1250 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 DCAF4Q8WV16 495 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 PURBQ96QR8 312 aaKnown RBP16.21■□□□□ 0.19
CLN3-235ENST00000568497 LARP6Q9BRS8 491 aaKnown RBP16.21■□□□□ 0.19
CLN3-235ENST00000568497 SNX14Q9Y5W7 946 aa16.21■□□□□ 0.19
CLN3-235ENST00000568497 ZNF536O15090 1300 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 DTNBO60941 627 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 ZBED4O75132 1171 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 CD4P01730 458 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 STAT2P52630 851 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 NHLH1Q02575 133 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 WTAPQ15007 396 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 DGKHQ86XP1 1220 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 RPUSD2Q8IZ73 545 aaKnown RBP16.2■□□□□ 0.18
CLN3-235ENST00000568497 PRPF38AQ8NAV1 312 aaKnown RBP16.2■□□□□ 0.18
CLN3-235ENST00000568497 ARNTL2Q8WYA1 636 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 ANKS1AQ92625 1134 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 JAKMIP1Q96N16 626 aaKnown RBP16.2■□□□□ 0.18
CLN3-235ENST00000568497 LY9Q9HBG7 655 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 SLC38A10Q9HBR0 1119 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 CD320Q9NPF0 282 aa16.2■□□□□ 0.18
CLN3-235ENST00000568497 CTDP1Q9Y5B0 961 aaPredicted RBP16.2■□□□□ 0.18
CLN3-235ENST00000568497 EPOPA6NHQ4 379 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 SH2B2O14492 632 aaPredicted RBP16.19■□□□□ 0.18
CLN3-235ENST00000568497 SNAI1O95863 264 aaPredicted RBP16.19■□□□□ 0.18
CLN3-235ENST00000568497 ALAS1P13196 640 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 SSTR3P32745 418 aaPredicted RBP16.19■□□□□ 0.18
CLN3-235ENST00000568497 MUM1L1Q5H9M0 696 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 MAMDC4Q6UXC1 1216 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 DDX11Q96FC9 970 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 TTC14Q96N46 770 aa16.19■□□□□ 0.18
CLN3-235ENST00000568497 UPF3AQ9H1J1 476 aaKnown RBP16.19■□□□□ 0.18
CLN3-235ENST00000568497 SNHG28P0DPA3 235 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 HSPA4P34932 840 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 GJA9P57773 515 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 SCLYQ96I15 445 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 NEK1Q96PY6 1258 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 USP26Q9BXU7 913 aa16.18■□□□□ 0.18
CLN3-235ENST00000568497 hCG_1642624A0A1W2PR95 340 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 ADCY6O43306 1168 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 DHX16O60231 1041 aaKnown RBP16.17■□□□□ 0.18
CLN3-235ENST00000568497 BEX3Q00994 111 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 ACVR2BQ13705 512 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 CCDC144BQ3MJ40 725 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 USH1GQ495M9 461 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 NFXL1Q6ZNB6 911 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 FAM160B2Q86V87 743 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 GJD3Q8N144 294 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 CHURC1Q8WUH1 139 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 NOC4LQ9BVI4 516 aaKnown RBP16.17■□□□□ 0.18
CLN3-235ENST00000568497 WNT8AQ9H1J5 351 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 MAD2L2Q9UI95 211 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 BRPF3Q9ULD4 1205 aa16.17■□□□□ 0.18
CLN3-235ENST00000568497 PPFIA3O75145 1194 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 PARP1P09874 1014 aaKnown RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 MCM5P33992 734 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 NKX3-2P78367 333 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 CXCL17Q6UXB2 119 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 NOL8Q76FK4 1167 aaKnown RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 ZNF467Q7Z7K2 595 aaPredicted RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 ADGRF4Q8IZF3 695 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 SLC43A3Q8NBI5 491 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 FBXL18Q96ME1 805 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 TEX13BQ9BXU2 312 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 RANBP17Q9H2T7 1088 aaKnown RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 RNF146Q9NTX7 359 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 CCPG1Q9ULG6 757 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 NAP1L2Q9ULW6 460 aaPredicted RBP16.16■□□□□ 0.18
CLN3-235ENST00000568497 SYNPO2Q9UMS6 1093 aa16.16■□□□□ 0.18
CLN3-235ENST00000568497 MCM3APO60318 1980 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 ERICH2A1L162 156 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 PLEKHA8P1O95397 391 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 PTGS1P23219 599 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 EXOSC10Q01780 885 aaKnown RBP16.15■□□□□ 0.18
CLN3-235ENST00000568497 CNTN2Q02246 1040 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 GRB10Q13322 594 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 TTLL4Q14679 1199 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 GRM4Q14833 912 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 PPP4R3BQ5MIZ7 849 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 RNF20Q5VTR2 975 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 BTNL9Q6UXG8 535 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 DEFB128Q7Z7B8 93 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 HOMER1Q86YM7 354 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 ZNF654Q8IZM8 581 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 CCDC82Q8N4S0 544 aa16.15■□□□□ 0.18
CLN3-235ENST00000568497 TBC1D5Q92609 795 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms