RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RCSD1Q6JBY9 416 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 LRRC8DQ7L1W4 858 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 FBXO22Q8NEZ5 403 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 ANKS1AQ92625 1134 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 C17orf80Q9BSJ5 609 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 TANC1Q9C0D5 1861 aa19.2■□□□□ 0.66
CLK3-223ENST00000568488 ABHD14A-ACY1A0A1B0GW23 586 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 A6NJR5 290 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 NKRFO15226 690 aaKnown RBP eCLIP19.19■□□□□ 0.66
CLK3-223ENST00000568488 PLA2G6O60733 806 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 SELPP16109 830 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 CALML3P27482 149 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 PDE4DQ08499 809 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 HFE2Q6ZVN8 426 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 NEK9Q8TD19 979 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 OSBP2Q969R2 916 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 EPB41L4AQ9HCS5 686 aaPredicted RBP19.19■□□□□ 0.66
CLK3-223ENST00000568488 CTNNA3Q9UI47 895 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 STX8Q9UNK0 236 aa19.19■□□□□ 0.66
CLK3-223ENST00000568488 TRIP12Q14669 1992 aaPredicted RBP19.19■□□□□ 0.66
CLK3-223ENST00000568488 RBAK-RBAKDNI3L0D1 243 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 HMMRO75330 724 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 ICAM1P05362 532 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 TXNP10599 105 aaKnown RBP19.18■□□□□ 0.66
CLK3-223ENST00000568488 PDE4BQ07343 736 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 IKBKEQ14164 716 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 TCTN1Q2MV58 587 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 GDF6Q6KF10 455 aaPredicted RBP19.18■□□□□ 0.66
CLK3-223ENST00000568488 MFSD14AQ96MC6 490 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 FAM50BQ9Y247 325 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 SCN10AQ9Y5Y9 1956 aa19.18■□□□□ 0.66
CLK3-223ENST00000568488 NFIBO00712 420 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 NBNO60934 754 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 PTPROQ16827 1216 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 PANK1Q8TE04 598 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 SCFD2Q8WU76 684 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 MRPL38Q96DV4 380 aaKnown RBP19.17■□□□□ 0.66
CLK3-223ENST00000568488 PHOX2BQ99453 314 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 MPHOSPH6Q99547 160 aaKnown RBP19.17■□□□□ 0.66
CLK3-223ENST00000568488 MYH7P12883 1935 aa19.17■□□□□ 0.66
CLK3-223ENST00000568488 LOC102724159A0A0B4J2E5 919 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 GPAA1O43292 621 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 PARNO95453 639 aaKnown RBP19.16■□□□□ 0.66
CLK3-223ENST00000568488 GNAT2P19087 354 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 ZP2Q05996 745 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 PWP2Q15269 919 aaKnown RBP19.16■□□□□ 0.66
CLK3-223ENST00000568488 CCDC96Q2M329 555 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 RASGRP2Q7LDG7 609 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 IFNL3Q8IZI9 196 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 APPBP2Q92624 585 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 UPF3BQ9BZI7 483 aaKnown RBP19.16■□□□□ 0.66
CLK3-223ENST00000568488 INSL6Q9Y581 213 aa19.16■□□□□ 0.66
CLK3-223ENST00000568488 PATL2C9JE40 543 aaKnown RBP19.15■□□□□ 0.66
CLK3-223ENST00000568488 EFCAB14O75071 495 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 CXCL10P02778 98 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 SLC3A2P08195 630 aaKnown RBP19.15■□□□□ 0.66
CLK3-223ENST00000568488 CKBP12277 381 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 SLC16A2P36021 539 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 SLC30A10Q6XR72 485 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 BANK1Q8NDB2 785 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 DHX38Q92620 1227 aaKnown RBP19.15■□□□□ 0.66
CLK3-223ENST00000568488 PRKAG3Q9UGI9 489 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 LCTP09848 1927 aa19.15■□□□□ 0.66
CLK3-223ENST00000568488 TCEAL5Q5H9L2 206 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.14■□□□□ 0.655e-12■■□□□ 14.3
CLK3-223ENST00000568488 RNF207Q6ZRF8 634 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 SIRT2Q8IXJ6 389 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 AFG1LQ8WV93 481 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 CTAGE1Q96RT6 745 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 RANBP17Q9H2T7 1088 aaKnown RBP19.14■□□□□ 0.65
CLK3-223ENST00000568488 PLIN4Q96Q06 1357 aa19.14■□□□□ 0.65
CLK3-223ENST00000568488 M0R2C6 588 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 RNF113AO15541 343 aaKnown RBP19.13■□□□□ 0.65
CLK3-223ENST00000568488 IRS1P35568 1242 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 EPC2Q52LR7 807 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 TIGD5Q53EQ6 642 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 PPP4R3BQ5MIZ7 849 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 TTBK2Q6IQ55 1244 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 CHST3Q7LGC8 479 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 ADHFE1Q8IWW8 467 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 MYOCDQ8IZQ8 938 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 KBTBD3Q8NAB2 608 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 PABPC5Q96DU9 382 aaKnown RBP19.13■□□□□ 0.65
CLK3-223ENST00000568488 NACAP1Q9BZK3 213 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 CLDND1Q9NY35 253 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 SIP14410 1827 aa19.13■□□□□ 0.65
CLK3-223ENST00000568488 C19orf67A6NJJ6 358 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 TSPY2A6NKD2 308 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 NMT2O60551 498 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 ARIH2O95376 493 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 GPM6BQ13491 265 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 SESTD1Q86VW0 696 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 C7orf31Q8N865 590 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 MUTYHQ9UIF7 546 aa19.12■□□□□ 0.65
CLK3-223ENST00000568488 B4DLN1 442 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 SMARCA5O60264 1052 aaPredicted RBP19.11■□□□□ 0.65
CLK3-223ENST00000568488 AMHP03971 560 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 MMP3P08254 477 aa19.11■□□□□ 0.65
CLK3-223ENST00000568488 MRPL12P52815 198 aaKnown RBP19.11■□□□□ 0.65
CLK3-223ENST00000568488 RPS6P62753 249 aaKnown RBP19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms