RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RPL11P62913 178 aaKnown RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 VMACQ2NL98 169 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 TTLL7Q6ZT98 887 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 B3GNT8Q7Z7M8 397 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 ZC3H18Q86VM9 953 aaKnown RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 CPA5Q8WXQ8 436 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 COPS5Q92905 334 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 EPN3Q9H201 632 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 NKX2-4Q9H2Z4 354 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 EPB41L4AQ9HCS5 686 aaPredicted RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 NGRNQ9NPE2 291 aaKnown RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 USP40Q9NVE5 1235 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 BTG4Q9NY30 223 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 RTEL1Q9NZ71 1219 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 MARCH2Q9P0N8 246 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 COA3Q9Y2R0 106 aaPredicted RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 TIMM13Q9Y5L4 95 aaPredicted RBP4.69□□□□□ -1.66
VPS35-207ENST00000568191 NCANO14594 1321 aa4.69□□□□□ -1.66
VPS35-207ENST00000568191 MEFVO15553 781 aaPredicted RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 SMARCA5O60264 1052 aaPredicted RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 FOXD2O60548 495 aaPredicted RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 SNRPB2P08579 225 aaKnown RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 CYP2C8P10632 490 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 ECI1P42126 302 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 KCNJ6P48051 423 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 CACNB2Q08289 660 aaPredicted RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 KCNAB2Q13303 367 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 CHRNA2Q15822 529 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 MROH9Q5TGP6 573 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 C6orf15Q6UXA7 325 aaPredicted RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 EEPD1Q7L9B9 569 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 FRMD5Q7Z6J6 570 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 SEC14L1Q92503 715 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 DIO2Q92813 273 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 TRMT2BQ96GJ1 504 aaKnown RBP4.68□□□□□ -1.66
VPS35-207ENST00000568191 TEPSINQ96N21 525 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 YIPF4Q9BSR8 244 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 MTA3Q9BTC8 594 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 KRTAP4-11Q9BYQ6 195 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 GPRC5CQ9NQ84 441 aa4.68□□□□□ -1.66
VPS35-207ENST00000568191 OTOL1A6NHN0 477 aaPredicted RBP4.67□□□□□ -1.66
VPS35-207ENST00000568191 C22orf46C9J442 243 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 NTRK1P04629 796 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 THBDP07204 575 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 PMLP29590 882 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 ZDHHC14Q8IZN3 488 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 ZNF513Q8N8E2 541 aaPredicted RBP4.67□□□□□ -1.66
VPS35-207ENST00000568191 CXorf38Q8TB03 319 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 FNIP1Q8TF40 1166 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 CHAMP1Q96JM3 812 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 MRGPRX3Q96LB0 322 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 XYLT2Q9H1B5 865 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 RXFP1Q9HBX9 757 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 NTMQ9P121 344 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 HCFC2Q9Y5Z7 792 aa4.67□□□□□ -1.66
VPS35-207ENST00000568191 IQCA1LA6NCM1 817 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 SUSD5O60279 629 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 ITGAVP06756 1048 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 CELA3BP08861 270 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 ATF2P15336 505 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 FBLN1P23142 703 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 SLURP1P55000 103 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 LIPIQ6XZB0 460 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 ETV3LQ6ZN32 361 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 CEP68Q76N32 757 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 SAPCD2Q86UD0 394 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 SMARCC2Q8TAQ2 1214 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 FEZF2Q8TBJ5 459 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 TMEM169Q96HH4 297 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 C20orf173Q96LM9 149 aa4.66□□□□□ -1.66
VPS35-207ENST00000568191 A0A0G2JLL6 359 aaPredicted RBP4.65□□□□□ -1.67
VPS35-207ENST00000568191 SH3D21A4FU49 640 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 FFAR3O14843 346 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 MAFKO60675 156 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 PPP1R11O60927 126 aaPredicted RBP4.65□□□□□ -1.67
VPS35-207ENST00000568191 DNAJA1P31689 397 aaKnown RBP4.65□□□□□ -1.67
VPS35-207ENST00000568191 LTBRP36941 435 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 SLC6A11P48066 632 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 SARSP49591 514 aaKnown RBP4.65□□□□□ -1.67
VPS35-207ENST00000568191 GJA9P57773 515 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 UBXN11Q5T124 520 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 MILR1Q7Z6M3 343 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 FAM124AQ86V42 546 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 ZNF227Q86WZ6 799 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 RIOX2Q8IUF8 465 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 TEX2Q8IWB9 1127 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 PLEKHO2Q8TD55 490 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 FRS2Q8WU20 508 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 BTN2A2Q8WVV5 523 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 ZBTB8AQ96BR9 441 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 BORCS6Q96GS4 357 aa4.65□□□□□ -1.67
VPS35-207ENST00000568191 DGKIO75912 1065 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 SCG5P05408 212 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 ETFBP38117 255 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 MC3RP41968 323 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 NKX3-2P78367 333 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 HTRA3P83110 453 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 KIAA2012Q0VF49 1180 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 LSAMPQ13449 338 aa4.64□□□□□ -1.67
VPS35-207ENST00000568191 ACBD5Q5T8D3 534 aaPredicted RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms