RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RAB34Q9BZG1 259 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 DNAI1Q9UI46 699 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 PHLPP2Q6ZVD8 1323 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 MEIS2O14770 477 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 GCFC2P16383 781 aaKnown RBP22.72■■□□□ 1.23
CLN3-230ENST00000568076 CCDC93Q567U6 631 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 CCDC47Q96A33 483 aaKnown RBP22.72■■□□□ 1.23
CLN3-230ENST00000568076 PSME4Q14997 1843 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 COL4A5P29400 1685 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 A0A1W2PRG0 241 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 CCNE1P24864 410 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 RBM26Q5T8P6 1007 aaKnown RBP22.71■■□□□ 1.23
CLN3-230ENST00000568076 KRT79Q5XKE5 535 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 ANKRD40Q6AI12 368 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 RSBN1LQ6PCB5 846 aaPredicted RBP22.71■■□□□ 1.23
CLN3-230ENST00000568076 CNGA4Q8IV77 575 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 RAD54LQ92698 747 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 P2RX5Q93086 422 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 CDK5RAP3Q96JB5 506 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 P2RX7Q99572 595 aaKnown RBP22.71■■□□□ 1.23
CLN3-230ENST00000568076 NAA15Q9BXJ9 866 aaKnown RBP22.71■■□□□ 1.23
CLN3-230ENST00000568076 GLT8D2Q9H1C3 349 aa22.71■■□□□ 1.23
CLN3-230ENST00000568076 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-230ENST00000568076 SPDYE2BA6NHP3 402 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 TCP10L2B9ZVM9 353 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 RAD17O75943 681 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 SPDYE6P0CI01 402 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 FECHP22830 423 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 EEF1GP26641 437 aaKnown RBP22.7■■□□□ 1.23
CLN3-230ENST00000568076 COBLL1Q53SF7 1204 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 TTLL6Q8N841 843 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 ANO3Q9BYT9 981 aa22.7■■□□□ 1.23
CLN3-230ENST00000568076 PSMD14O00487 310 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 UBXN1Q04323 297 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 CNNM4Q6P4Q7 775 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 CSGALNACT2Q8N6G5 542 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 ZNF507Q8TCN5 953 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 GMLQ99445 158 aa22.7■■□□□ 1.22
CLN3-230ENST00000568076 CLRN2A0PK11 232 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 LGALS16A8MUM7 142 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 SLU7O95391 586 aaKnown RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 UNC13DQ70J99 1090 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 CCDC51Q96ER9 411 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 EEF2KMTQ96G04 330 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 MRPL44Q9H9J2 332 aaKnown RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 SLC39A2Q9NP94 309 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 VIL1P09327 827 aaKnown RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 TAL1P17542 331 aaPredicted RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 KCNA3P22001 575 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 SYDE2Q5VT97 1194 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 DYMQ7RTS9 669 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 MB21D1Q8N884 522 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 NOC3LQ8WTT2 800 aaKnown RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 CRYGNQ8WXF5 182 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 UIMC1Q96RL1 719 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 PSMD1Q99460 953 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 AMNQ9BXJ7 453 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN3-230ENST00000568076 ZNF277Q9NRM2 450 aaPredicted RBP22.69■■□□□ 1.22
CLN3-230ENST00000568076 ABHD10Q9NUJ1 306 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 PCDHA12Q9UN75 941 aa22.69■■□□□ 1.22
CLN3-230ENST00000568076 PVALEFA0A1B0GWK0 134 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 GOLGA6L9A6NEM1 432 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 BMP3P12645 472 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 USP11P51784 963 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 ERO1AQ96HE7 468 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 NAP1L4Q99733 375 aaKnown RBP22.68■■□□□ 1.22
CLN3-230ENST00000568076 SEMA6BQ9H3T3 888 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 KCNMB3Q9NPA1 279 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 ADGRG1Q9Y653 693 aa22.68■■□□□ 1.22
CLN3-230ENST00000568076 CYP3A7-CYP3A51PA0A087WV96 503 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 BICDL2A1A5D9 508 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 CYP3A7P24462 503 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 RTKN2Q8IZC4 609 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 MBOAT7Q96N66 472 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 GTPBP4Q9BZE4 634 aaKnown RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 ZNF70Q9UC06 446 aaPredicted RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLN3-230ENST00000568076 HERC5Q9UII4 1024 aaKnown RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 ZBTB12Q9Y330 459 aaPredicted RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 V9GYY5 206 aaPredicted RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 TPM1P09493 284 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 PPP1R2P41236 205 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 ECE1P42892 770 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 ERVK-24P63145 666 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 TRIM14Q14142 442 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 USH1GQ495M9 461 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 BTNL9Q6UXG8 535 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 FBXO11Q86XK2 927 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 SPICE1Q8N0Z3 855 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 LARGE2Q8N3Y3 721 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 LRRN4CLQ8ND94 238 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 DDX12PQ92771 950 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 WDR24Q96S15 920 aa22.67■■□□□ 1.22
CLN3-230ENST00000568076 MAGEC2Q9UBF1 373 aaPredicted RBP22.67■■□□□ 1.22
CLN3-230ENST00000568076 A0A0U1RQJ8 604 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 MARCH6O60337 910 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 CCDC175P0C221 793 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 EHHADHQ08426 723 aa22.66■■□□□ 1.22
CLN3-230ENST00000568076 IKQ13123 557 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms