RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 GCOM1H8Y6P7 765 aaPredicted RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 STXBP3O00186 592 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 DNM1LO00429 736 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 CTAGE5O15320 804 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 DUSP11O75319 330 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 POLR2MP0CAP2 368 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 RARBP10826 455 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 SMPD1P17405 629 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 ADCYAP1R1P41586 468 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 RBM25P49756 843 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 AK2P54819 239 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 CCT2P78371 535 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 LRRC41Q15345 812 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 PKN1Q16512 942 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 IL31RAQ8NI17 732 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 NSUN6Q8TEA1 469 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 PHKBQ93100 1093 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 ZNF274Q96GC6 653 aaPredicted RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 UPF3AQ9H1J1 476 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 RNF39Q9H2S5 420 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 XPNPEP3Q9NQH7 507 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 FAM184BQ9ULE4 1060 aa11.31□□□□□ -0.6
CLK3-220ENST00000567992 GNEQ9Y223 722 aaKnown RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 V9GY48 417 aaPredicted RBP11.31□□□□□ -0.6
CLK3-220ENST00000567992 CEP290O15078 2479 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 CCDC196A0A1B0GTZ2 297 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 PRPF3O43395 683 aaKnown RBP11.3□□□□□ -0.6
CLK3-220ENST00000567992 LARGE1O95461 756 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 PGK1P00558 417 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 IFNAR1P17181 557 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 EIF2AK2P19525 551 aaKnown RBP11.3□□□□□ -0.6
CLK3-220ENST00000567992 NKX3-2P78367 333 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 PDE4DQ08499 809 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 SCRN1Q12765 414 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 PFKFB3Q16875 520 aaPredicted RBP11.3□□□□□ -0.6
CLK3-220ENST00000567992 GJC2Q5T442 439 aaPredicted RBP11.3□□□□□ -0.6
CLK3-220ENST00000567992 CCSAPQ6IQ19 270 aaPredicted RBP11.3□□□□□ -0.6
CLK3-220ENST00000567992 PPP1R18Q6NYC8 613 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 USP17L6PQ6QN14 398 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 HEATR3Q7Z4Q2 680 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 NECAB2Q7Z6G3 386 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 KLHDC9Q8NEP7 349 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 IWS1Q96ST2 819 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 PDCD2LQ9BRP1 358 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 C22orf23Q9BZE7 217 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 C11orf49Q9H6J7 331 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 BARHL2Q9NY43 387 aa11.3□□□□□ -0.6
CLK3-220ENST00000567992 hCG_1984214I3L0E3 225 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 PFKFB2O60825 505 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 PPFIA3O75145 1194 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 RGS20O76081 388 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 ARIH2O95376 493 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 NR3C2P08235 984 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 SCG2P13521 617 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 CST5P28325 142 aaPredicted RBP11.29□□□□□ -0.6
CLK3-220ENST00000567992 GJA9P57773 515 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 TNFAIP2Q03169 654 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 STK3Q13188 491 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 PGM5Q15124 567 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 UBE2SQ16763 222 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 DUSP28Q4G0W2 176 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 ARHGEF16Q5VV41 709 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 FCHSD1Q86WN1 690 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 ZNF713Q8N859 430 aaPredicted RBP11.29□□□□□ -0.6
CLK3-220ENST00000567992 MPHOSPH6Q99547 160 aaKnown RBP11.29□□□□□ -0.6
CLK3-220ENST00000567992 RNF26Q9BY78 433 aaPredicted RBP11.29□□□□□ -0.6
CLK3-220ENST00000567992 PHF24Q9UPV7 400 aa11.29□□□□□ -0.6
CLK3-220ENST00000567992 ADAMTS3O15072 1205 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 NEK4P51957 841 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 NAPAP54920 295 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 MRPS9P82933 396 aaKnown RBP11.28□□□□□ -0.6
CLK3-220ENST00000567992 ST3GAL1Q11201 340 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 ME3Q16798 604 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 IQSEC1Q6DN90 963 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 CCDC62Q6P9F0 684 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 TLK2Q86UE8 772 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 VSIG10LQ86VR7 867 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 ARRDC4Q8NCT1 418 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 SLC26A6Q9BXS9 759 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 WDR11Q9BZH6 1224 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 PSTPIP2Q9H939 334 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 RIC8AQ9NPQ8 531 aa11.28□□□□□ -0.6
CLK3-220ENST00000567992 RANBP2P49792 3224 aaKnown RBP11.28□□□□□ -0.6
CLK3-220ENST00000567992 DOCK5Q9H7D0 1870 aa11.27□□□□□ -0.6
CLK3-220ENST00000567992 ESYT2A0FGR8 921 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 B4DLN1 442 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 EIF3JO75822 258 aaKnown RBP11.27□□□□□ -0.61
CLK3-220ENST00000567992 CTDNEP1O95476 244 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 CLK2P49760 499 aaKnown RBP11.27□□□□□ -0.61
CLK3-220ENST00000567992 MRPL12P52815 198 aaKnown RBP11.27□□□□□ -0.61
CLK3-220ENST00000567992 SNX17Q15036 470 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 ANKRD1Q15327 319 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 STXBP2Q15833 593 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 LRRC26Q2I0M4 334 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 NOL8Q76FK4 1167 aaKnown RBP11.27□□□□□ -0.61
CLK3-220ENST00000567992 RNF180Q86T96 592 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 TEX2Q8IWB9 1127 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 SMARCC2Q8TAQ2 1214 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 SCFD2Q8WU76 684 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms