RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SUPT20HL2P0C7V6 817 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 CCL23P55773 120 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 BRDTQ58F21 947 aaPredicted RBP20.02■□□□□ 0.79
CLN3-216ENST00000565316 TBC1D5Q92609 795 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 IL25Q9H293 177 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 MTIF3Q9H2K0 278 aaKnown RBP20.02■□□□□ 0.79
CLN3-216ENST00000565316 CNNM2Q9H8M5 875 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 TRMT13Q9NUP7 481 aaKnown RBP20.02■□□□□ 0.79
CLN3-216ENST00000565316 VCANP13611 3396 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 RAD50Q92878 1312 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 TTC28Q96AY4 2481 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 QRICH1Q2TAL8 776 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 CCDC62Q6P9F0 684 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 RPUSD2Q8IZ73 545 aaKnown RBP20.01■□□□□ 0.79
CLN3-216ENST00000565316 SYTL5Q8TDW5 730 aaPredicted RBP20.01■□□□□ 0.79
CLN3-216ENST00000565316 COPS5Q92905 334 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 JMJD4Q9H9V9 463 aa20.01■□□□□ 0.79
CLN3-216ENST00000565316 GPHNQ9NQX3 736 aaPredicted RBP20.01■□□□□ 0.79
CLN3-216ENST00000565316 SCN10AQ9Y5Y9 1956 aa20■□□□□ 0.79
CLN3-216ENST00000565316 ARIH2O95376 493 aa20■□□□□ 0.79
CLN3-216ENST00000565316 PARP1P09874 1014 aaKnown RBP20■□□□□ 0.79
CLN3-216ENST00000565316 TXNP10599 105 aaKnown RBP20■□□□□ 0.79
CLN3-216ENST00000565316 PDE4AP27815 886 aa20■□□□□ 0.79
CLN3-216ENST00000565316 TTLL4Q14679 1199 aa20■□□□□ 0.79
CLN3-216ENST00000565316 RAB30Q15771 203 aa20■□□□□ 0.79
CLN3-216ENST00000565316 NBPF20Q3BBV1 942 aa20■□□□□ 0.79
CLN3-216ENST00000565316 NFRKBQ6P4R8 1299 aa20■□□□□ 0.79
CLN3-216ENST00000565316 MCF2L2Q86YR7 1114 aa20■□□□□ 0.79
CLN3-216ENST00000565316 NSUN6Q8TEA1 469 aaKnown RBP20■□□□□ 0.79
CLN3-216ENST00000565316 TAAR1Q96RJ0 339 aa20■□□□□ 0.79
CLN3-216ENST00000565316 COL20A1Q9P218 1284 aa20■□□□□ 0.79
CLN3-216ENST00000565316 CHD7Q9P2D1 2997 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 CYP2C9P11712 490 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 PTPN11Q06124 597 aaPredicted RBP19.99■□□□□ 0.79
CLN3-216ENST00000565316 OTOP2Q7RTS6 562 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 FBXO11Q86XK2 927 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 IWS1Q96ST2 819 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 UBAC1Q9BSL1 405 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 MSRAQ9UJ68 235 aa19.99■□□□□ 0.79
CLN3-216ENST00000565316 MRPL11Q9Y3B7 192 aaKnown RBP19.99■□□□□ 0.79
CLN3-216ENST00000565316 GSPT1P15170 499 aaKnown RBP19.98■□□□□ 0.79
CLN3-216ENST00000565316 SEC23AQ15436 765 aa19.98■□□□□ 0.79
CLN3-216ENST00000565316 TTC22Q5TAA0 569 aa19.98■□□□□ 0.79
CLN3-216ENST00000565316 MTMR8Q96EF0 704 aa19.98■□□□□ 0.79
CLN3-216ENST00000565316 SCLYQ96I15 445 aa19.98■□□□□ 0.79
CLN3-216ENST00000565316 PFKMP08237 780 aa19.97■□□□□ 0.79
CLN3-216ENST00000565316 GHRHRQ02643 423 aa19.97■□□□□ 0.79
CLN3-216ENST00000565316 IFIT1BQ5T764 474 aaKnown RBP19.97■□□□□ 0.79
CLN3-216ENST00000565316 STAG2Q8N3U4 1231 aa19.97■□□□□ 0.79
CLN3-216ENST00000565316 RMDN3Q96TC7 470 aa19.97■□□□□ 0.79
CLN3-216ENST00000565316 PITPNM1O00562 1244 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 ARHGAP1Q07960 439 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 STXBP2Q15833 593 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 CYB5R4Q7L1T6 521 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 USP38Q8NB14 1042 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 VAT1LQ9HCJ6 419 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 YBX2Q9Y2T7 364 aaKnown RBP19.96■□□□□ 0.79
CLN3-216ENST00000565316 SLC4A7Q9Y6M7 1214 aa19.96■□□□□ 0.79
CLN3-216ENST00000565316 PALM3A6NDB9 673 aaPredicted RBP19.95■□□□□ 0.78
CLN3-216ENST00000565316 OPLAHO14841 1288 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 DHX16O60231 1041 aaKnown RBP19.95■□□□□ 0.78
CLN3-216ENST00000565316 GH1P01241 217 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 RFC2P35250 354 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 HSD17B4P51659 736 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 LY6KQ17RY6 165 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 FAM47CQ5HY64 1035 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 SEPT14Q6ZU15 432 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 AFG1LQ8WV93 481 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 AMNQ9BXJ7 453 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 PRDM12Q9H4Q4 367 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 MAD2L2Q9UI95 211 aa19.95■□□□□ 0.78
CLN3-216ENST00000565316 KLRF2D3W0D1 207 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 EIF3JO75822 258 aaKnown RBP19.94■□□□□ 0.78
CLN3-216ENST00000565316 MMP3P08254 477 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 ARHGEF16Q5VV41 709 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 EMID1Q96A84 441 aaPredicted RBP19.94■□□□□ 0.78
CLN3-216ENST00000565316 GAS2L1Q99501 681 aaPredicted RBP19.94■□□□□ 0.78
CLN3-216ENST00000565316 NKX2-4Q9H2Z4 354 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 PXMP2Q9NR77 195 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 DDX41Q9UJV9 622 aaKnown RBP19.94■□□□□ 0.78
CLN3-216ENST00000565316 TRANK1O15050 2925 aa19.94■□□□□ 0.78
CLN3-216ENST00000565316 PPP1R11O60927 126 aaPredicted RBP19.93■□□□□ 0.78
CLN3-216ENST00000565316 NR3C2P08235 984 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 CHMLP26374 656 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 ADGRE1Q14246 886 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 SESTD1Q86VW0 696 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 SAMD3Q8N6K7 520 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 PPP1R13LQ8WUF5 828 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 KAT2BQ92831 832 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 SLC28A3Q9HAS3 691 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 MAP3K20Q9NYL2 800 aaKnown RBP19.93■□□□□ 0.78
CLN3-216ENST00000565316 SUPT16HQ9Y5B9 1047 aaKnown RBP19.93■□□□□ 0.78
CLN3-216ENST00000565316 PCDHA11Q9Y5I1 949 aa19.93■□□□□ 0.78
CLN3-216ENST00000565316 ZBTB5O15062 677 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 CFBP00751 764 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 CYP21A2P08686 494 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 IQCF3P0C7M6 154 aa19.92■□□□□ 0.78
CLN3-216ENST00000565316 ATP2A2P16615 1042 aaKnown RBP19.92■□□□□ 0.78
CLN3-216ENST00000565316 EIF2AK2P19525 551 aaKnown RBP19.92■□□□□ 0.78
CLN3-216ENST00000565316 RABGGTBP53611 331 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms