RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 SNHG28P0DPA3 235 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 ATP1A3P13637 1013 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 RBL2Q08999 1139 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 TPD52L1Q16890 204 aaPredicted RBP8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 SLC35G1Q2M3R5 365 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 CFAP100Q494V2 611 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 ASPRV1Q53RT3 343 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 TYW1BQ6NUM6 668 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 DTHD1Q6ZMT9 781 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 HEATR3Q7Z4Q2 680 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 VSTM4Q8IW00 320 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 GPKOWQ92917 476 aaPredicted RBP eCLIP8.19□□□□□ -1.12e-6■■□□□ 11.5
HERPUD1-209ENST00000564678 TEKT1Q969V4 418 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 CCDC17Q96LX7 622 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 AK8Q96MA6 479 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 CCSER1Q9C0I3 900 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 SERPINB13Q9UIV8 391 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 NFE2L3Q9Y4A8 694 aa8.19□□□□□ -1.1
HERPUD1-209ENST00000564678 CCP110O43303 1012 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 HLA-DOAP06340 250 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 MMP10P09238 476 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 TNNT1P13805 278 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 IBSPP21815 317 aaPredicted RBP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 CLDN10P78369 228 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 PLEKHG6Q3KR16 790 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 SOGA3Q5TF21 947 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 SPATA1Q5VX52 437 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 STYK1Q6J9G0 422 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 MTERF4Q7Z6M4 381 aaKnown RBP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 CERS5Q8N5B7 392 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 GTF3C2Q8WUA4 911 aaPredicted RBP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 GMLQ99445 158 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 EHD4Q9H223 541 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 USP40Q9NVE5 1235 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 RMND1Q9NWS8 449 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 SMCO2A6NFE2 343 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 C3orf80F5H4A9 247 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 TTLL1O95922 423 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 PDHBP11177 359 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 AFMP43652 599 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 NAPAP54920 295 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 ARID5BQ14865 1188 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 NONOQ15233 471 aaKnown RBP eCLIP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 IL17AQ16552 155 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 SWI5Q1ZZU3 235 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 STRIP1Q5VSL9 837 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 ARMCX5Q6P1M9 558 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 PDXDC2PQ6P474 469 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 ZDHHC15Q96MV8 337 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 CTAGE1Q96RT6 745 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 MAP7D2Q96T17 732 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 GTPBP4Q9BZE4 634 aaKnown RBP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 OSBPL2Q9H1P3 480 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 DHX36Q9H2U1 1008 aaKnown RBP8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 TMX1Q9H3N1 280 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 CUEDC2Q9H467 287 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 MAGEF1Q9HAY2 307 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 PCDH12Q9NPG4 1184 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 FAM198AQ9UFP1 575 aa8.18□□□□□ -1.1
HERPUD1-209ENST00000564678 TTLL13PA6NNM8 815 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 MCCD1P59942 119 aaPredicted RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 FMR1Q06787 632 aaKnown RBP eCLIP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 CUL4BQ13620 913 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 PTPN14Q15678 1187 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 GPATCH4Q5T3I0 446 aaKnown RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 APOBEC3HQ6NTF7 200 aaKnown RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 NYAP1Q6ZVC0 841 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 TAS1R3Q7RTX0 852 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 GRAMD1CQ8IYS0 662 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 CCAR2Q8N163 923 aaKnown RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 MKNK1Q9BUB5 465 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 IRF2BPLQ9H1B7 796 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 PARP2Q9UGN5 583 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 H0YIN7 160 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 RRP9O43818 475 aaKnown RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 GOLGA8HP0CJ92 632 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 UBA7P41226 1012 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 PICALMQ13492 652 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 COL19A1Q14993 1142 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 NR1I3Q14994 352 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 INF2Q27J81 1249 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 CDC42EP5Q6NZY7 148 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 FCHSD1Q86WN1 690 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 SULF1Q8IWU6 871 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 DPF2Q92785 391 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 CNKSR1Q969H4 720 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 RNF34Q969K3 372 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 DDX4Q9NQI0 724 aaKnown RBP8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 DISC1Q9NRI5 854 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 PRR12Q9ULL5 1215 aa8.17□□□□□ -1.1
HERPUD1-209ENST00000564678 EP400Q96L91 3159 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 MYH8P13535 1937 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 A0A1B0GTH6 734 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 LRRC10BA6NIK2 292 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 ADAMTS3O15072 1205 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 PRKAR2AP13861 404 aaKnown RBP8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 STAT6P42226 847 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 CRKP46108 304 aa8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 TBX2Q13207 712 aaPredicted RBP8.16□□□□□ -1.1
HERPUD1-209ENST00000564678 MTMR2Q13614 643 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms