RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SLC35G1Q2M3R5 365 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 GNASQ5JWF2 1037 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 ARHGEF16Q5VV41 709 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 SLC39A5Q6ZMH5 540 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 SRBD1Q8N5C6 995 aaKnown RBP15.48■□□□□ 0.07
CLK3-216ENST00000564468 LENG1Q96BZ8 264 aaPredicted RBP15.48■□□□□ 0.07
CLK3-216ENST00000564468 TCEANC2Q96MN5 208 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 USP26Q9BXU7 913 aa15.48■□□□□ 0.07
CLK3-216ENST00000564468 KLF18A0A0U1RQI7 1052 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 RBM47A0AV96 593 aaKnown RBP15.47■□□□□ 0.07
CLK3-216ENST00000564468 PLEKHA8P1O95397 391 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 CASTP20810 708 aaKnown RBP15.47■□□□□ 0.07
CLK3-216ENST00000564468 RPS6KB1P23443 525 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 ATN1P54259 1190 aaPredicted RBP15.47■□□□□ 0.07
CLK3-216ENST00000564468 STXBP2Q15833 593 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 KCNA10Q16322 511 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 RTN1Q16799 776 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 DUSP28Q4G0W2 176 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 C1orf53Q5VUE5 145 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 Q6ZUG5 572 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 TMTC3Q6ZXV5 915 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 TLK2Q86UE8 772 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 TDHQ8IZJ6 230 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 FBXL16Q8N461 479 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 SCFD2Q8WU76 684 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 PIBF1Q8WXW3 757 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 CUL5Q93034 780 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 FERMT2Q96AC1 680 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 GLT1D1Q96MS3 346 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 TAAR1Q96RJ0 339 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 WDR11Q9BZH6 1224 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 PDGFCQ9NRA1 345 aa15.47■□□□□ 0.07
CLK3-216ENST00000564468 ZMYND8Q9ULU4 1186 aaPredicted RBP15.47■□□□□ 0.07
CLK3-216ENST00000564468 GNEQ9Y223 722 aaKnown RBP15.47■□□□□ 0.07
CLK3-216ENST00000564468 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.46■□□□□ 0.07
CLK3-216ENST00000564468 A0A1W2PQ45 241 aaPredicted RBP15.46■□□□□ 0.07
CLK3-216ENST00000564468 A0A1W2PQY0 241 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 GOLGA8AA7E2F4 631 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 GOLGA8BA8MQT2 603 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 OPLAHO14841 1288 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 SMPD1P17405 629 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 ACLYP53396 1101 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 TTLL4Q14679 1199 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 BRDTQ58F21 947 aaPredicted RBP15.46■□□□□ 0.07
CLK3-216ENST00000564468 TM6SF1Q9BZW5 370 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 UBE2OQ9C0C9 1292 aaKnown RBP15.46■□□□□ 0.07
CLK3-216ENST00000564468 STARD7Q9NQZ5 370 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 PXMP2Q9NR77 195 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 COL20A1Q9P218 1284 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 PRKAG2Q9UGJ0 569 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 BRPF3Q9ULD4 1205 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 NAP1L2Q9ULW6 460 aaPredicted RBP15.46■□□□□ 0.07
CLK3-216ENST00000564468 UNC80Q8N2C7 3258 aa15.46■□□□□ 0.07
CLK3-216ENST00000564468 ELP1O95163 1332 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 DYNC1LI2O43237 492 aaPredicted RBP15.45■□□□□ 0.06
CLK3-216ENST00000564468 ADCY6O43306 1168 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 EIF3JO75822 258 aaKnown RBP15.45■□□□□ 0.06
CLK3-216ENST00000564468 CABYRO75952 493 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 ASGR1P07306 291 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 NR3C2P08235 984 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 EIF2AK2P19525 551 aaKnown RBP15.45■□□□□ 0.06
CLK3-216ENST00000564468 RTP1P59025 263 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 SNX17Q15036 470 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 CCSAPQ6IQ19 270 aaPredicted RBP15.45■□□□□ 0.06
CLK3-216ENST00000564468 RUFY3Q7L099 469 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 RAB11FIP4Q86YS3 637 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 CCDC82Q8N4S0 544 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 BRF1Q92994 677 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 AGXT2Q9BYV1 514 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 CYP46A1Q9Y6A2 500 aa15.45■□□□□ 0.06
CLK3-216ENST00000564468 DDX49Q9Y6V7 483 aaKnown RBP15.45■□□□□ 0.06
CLK3-216ENST00000564468 hCG_1984214I3L0E3 225 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 TXNP10599 105 aaKnown RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 CPA1P15085 419 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 HOXA13P31271 388 aaPredicted RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 MAGEA10P43363 369 aaPredicted RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 CPT1AP50416 773 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 METAP2P50579 478 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLK3-216ENST00000564468 FSCN1Q16658 493 aaKnown RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 KCNV1Q6PIU1 500 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 TEX2Q8IWB9 1127 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 CMTR1Q8N1G2 835 aaKnown RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 ZNF713Q8N859 430 aaPredicted RBP15.44■□□□□ 0.06
CLK3-216ENST00000564468 SMARCC2Q8TAQ2 1214 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 VTI1AQ96AJ9 217 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 PDCD2LQ9BRP1 358 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 SEZ6LQ9BYH1 1024 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 ZSWIM6Q9HCJ5 1215 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 MTMR10Q9NXD2 777 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 ATP11BQ9Y2G3 1177 aa15.44■□□□□ 0.06
CLK3-216ENST00000564468 MROH7Q68CQ1 1323 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 MYADML2A6NDP7 307 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 SYN1P17600 705 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 CCND2P30279 289 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 APOBRQ0VD83 1088 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 FCHSD1Q86WN1 690 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 OR6J1Q8NGC5 347 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 POLR3EQ9NVU0 708 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 DNAH12Q6ZR08 3092 aa15.43■□□□□ 0.06
CLK3-216ENST00000564468 A0A0U1RQG5 324 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms