RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 CXCL10P02778 98 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 ICAM1P05362 532 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 TFAP4Q01664 338 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 HIC1Q14526 733 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 LEXMQ3ZCV2 418 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 GDF6Q6KF10 455 aaPredicted RBP12.33□□□□□ -0.44
SF3B3-204ENST00000563739 NFRKBQ6P4R8 1299 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 OR6J1Q8NGC5 347 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 DDRGK1Q96HY6 314 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 RALGAPA2Q2PPJ7 1873 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 KMT2EQ8IZD2 1858 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 PRR33A8MZF0 331 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 RNF113AO15541 343 aaKnown RBP12.32□□□□□ -0.44
SF3B3-204ENST00000563739 BAIAP3O94812 1187 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 SUPT20HL2P0C7V6 817 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 SLC1A4P43007 532 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 ERVK-21P61565 698 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 RCSD1Q6JBY9 416 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 ZSCAN25Q6NSZ9 544 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 BTNL9Q6UXG8 535 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 LMCD1Q9NZU5 365 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 CCPG1Q9ULG6 757 aa12.32□□□□□ -0.44
SF3B3-204ENST00000563739 CTDP1Q9Y5B0 961 aaPredicted RBP12.32□□□□□ -0.44
SF3B3-204ENST00000563739 CFAP54Q96N23 3096 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 GJB5O95377 273 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 ACTN1P12814 892 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 SLC16A2P36021 539 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 TDO2P48775 406 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 CPT1AP50416 773 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 NHLH1Q02575 133 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 PPARAQ07869 468 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 COL19A1Q14993 1142 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 FAM47CQ5HY64 1035 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 CCDC62Q6P9F0 684 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 ZNF444Q8N0Y2 327 aaPredicted RBP12.31□□□□□ -0.44
SF3B3-204ENST00000563739 NEK9Q8TD19 979 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 CHURC1Q8WUH1 139 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 OSBPL7Q9BZF2 842 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 ECHDC1Q9NTX5 307 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 MTUS1Q9ULD2 1270 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 MYH7BA7E2Y1 1941 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 MYO15AQ9UKN7 3530 aa12.31□□□□□ -0.44
SF3B3-204ENST00000563739 KIAA1671Q9BY89 1806 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 DMDP11532 3685 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 LOC102724159A0A0B4J2E5 919 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 POTEB3A0JP26 581 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 PATL2C9JE40 543 aaKnown RBP12.3□□□□□ -0.44
SF3B3-204ENST00000563739 TSPY3P0CV98 308 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 TSPY8P0CW00 308 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 MRE11P49959 708 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 CTDSPL2Q05D32 466 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 PTPN11Q06124 597 aaPredicted RBP12.3□□□□□ -0.44
SF3B3-204ENST00000563739 ARHGAP1Q07960 439 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 PWP2Q15269 919 aaKnown RBP12.3□□□□□ -0.44
SF3B3-204ENST00000563739 POTEBQ6S5H4 581 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 GJD3Q8N144 294 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 PHOX2BQ99453 314 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 C17orf80Q9BSJ5 609 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 LAMA4Q16363 1823 aa12.3□□□□□ -0.44
SF3B3-204ENST00000563739 GRXCR2A6NFK2 248 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 HMMRO75330 724 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 KCNA5P22460 613 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 ZMYM1Q5SVZ6 1142 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 C20orf194Q5TEA3 1177 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 LRRC8DQ7L1W4 858 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 PI4K2BQ8TCG2 481 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 SP7Q8TDD2 431 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-204ENST00000563739 OTUD7AQ8TE49 926 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-204ENST00000563739 AFAP1L1Q8TED9 768 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 FBXL18Q96ME1 805 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 LRRCC1Q9C099 1032 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 FTOQ9C0B1 505 aaKnown RBP eCLIP12.29□□□□□ -0.44
SF3B3-204ENST00000563739 COL20A1Q9P218 1284 aa12.29□□□□□ -0.44
SF3B3-204ENST00000563739 C19orf67A6NJJ6 358 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 LGR5O75473 907 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 MMP3P08254 477 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 FGRP09769 529 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 LINC00271P0C7V0 271 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 CKBP12277 381 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 SELPP16109 830 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 GNAT2P19087 354 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 RPS6P62753 249 aaKnown RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 HTRA4P83105 476 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 ZP2Q05996 745 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 IKQ13123 557 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 PPP2R5BQ15173 497 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 PTGISQ16647 500 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 LRRFIP1Q32MZ4 808 aaKnown RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 VPS53Q5VIR6 699 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 SYDE2Q5VT97 1194 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 CNKSR3Q6P9H4 555 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.28□□□□□ -0.446e-6■■■□□ 19.1
SF3B3-204ENST00000563739 MIER1Q8N108 512 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 TGS1Q96RS0 853 aaKnown RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 ALG13Q9NP73 1137 aaKnown RBP12.28□□□□□ -0.44
SF3B3-204ENST00000563739 STX8Q9UNK0 236 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 MYH6P13533 1939 aa12.28□□□□□ -0.44
SF3B3-204ENST00000563739 FRMPD2Q68DX3 1309 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms