RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 IL25Q9H293 177 aa18.41■□□□□ 0.54
CLK3-211ENST00000563297 VAT1LQ9HCJ6 419 aa18.41■□□□□ 0.54
CLK3-211ENST00000563297 GPHNQ9NQX3 736 aaPredicted RBP18.41■□□□□ 0.54
CLK3-211ENST00000563297 TRMT13Q9NUP7 481 aaKnown RBP18.41■□□□□ 0.54
CLK3-211ENST00000563297 MYH6P13533 1939 aa18.41■□□□□ 0.54
CLK3-211ENST00000563297 SCN10AQ9Y5Y9 1956 aa18.41■□□□□ 0.54
CLK3-211ENST00000563297 SUPT20HL2P0C7V6 817 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 TXNP10599 105 aaKnown RBP18.4■□□□□ 0.54
CLK3-211ENST00000563297 CYP2C9P11712 490 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 QRICH1Q2TAL8 776 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 NBPF20Q3BBV1 942 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 BRDTQ58F21 947 aaPredicted RBP18.4■□□□□ 0.54
CLK3-211ENST00000563297 RPUSD2Q8IZ73 545 aaKnown RBP18.4■□□□□ 0.54
CLK3-211ENST00000563297 SYTL5Q8TDW5 730 aaPredicted RBP18.4■□□□□ 0.54
CLK3-211ENST00000563297 SCLYQ96I15 445 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 TAAR1Q96RJ0 339 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 JMJD4Q9H9V9 463 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 TNKSO95271 1327 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 ABCB11O95342 1321 aa18.4■□□□□ 0.54
CLK3-211ENST00000563297 KPNA6O60684 536 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 ARIH2O95376 493 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 PARP1P09874 1014 aaKnown RBP18.39■□□□□ 0.53
CLK3-211ENST00000563297 PDE4AP27815 886 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 TTLL4Q14679 1199 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 CCDC62Q6P9F0 684 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 CNNM2Q9H8M5 875 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 COL20A1Q9P218 1284 aa18.39■□□□□ 0.53
CLK3-211ENST00000563297 FBXO11Q86XK2 927 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 MCF2L2Q86YR7 1114 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 STAG2Q8N3U4 1231 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 NSUN6Q8TEA1 469 aaKnown RBP18.38■□□□□ 0.53
CLK3-211ENST00000563297 PPP1R13LQ8WUF5 828 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 UBAC1Q9BSL1 405 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 MTIF3Q9H2K0 278 aaKnown RBP18.38■□□□□ 0.53
CLK3-211ENST00000563297 MSRAQ9UJ68 235 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 MRPL11Q9Y3B7 192 aaKnown RBP18.38■□□□□ 0.53
CLK3-211ENST00000563297 SUPT16HQ9Y5B9 1047 aaKnown RBP18.38■□□□□ 0.53
CLK3-211ENST00000563297 RAD50Q92878 1312 aa18.38■□□□□ 0.53
CLK3-211ENST00000563297 DHX16O60231 1041 aaKnown RBP18.37■□□□□ 0.53
CLK3-211ENST00000563297 GSPT1P15170 499 aaKnown RBP18.37■□□□□ 0.53
CLK3-211ENST00000563297 SEC23AQ15436 765 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 RAB30Q15771 203 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 FAM47CQ5HY64 1035 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 IFIT1BQ5T764 474 aaKnown RBP18.37■□□□□ 0.53
CLK3-211ENST00000563297 NFRKBQ6P4R8 1299 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 CYB5R4Q7L1T6 521 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 IWS1Q96ST2 819 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 RMDN3Q96TC7 470 aa18.37■□□□□ 0.53
CLK3-211ENST00000563297 CHD9Q3L8U1 2897 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 VCANP13611 3396 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 SCN5AQ14524 2016 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 TRIP12Q14669 1992 aaPredicted RBP18.36■□□□□ 0.53
CLK3-211ENST00000563297 STXBP2Q15833 593 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 LY6KQ17RY6 165 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 KIAA1217Q5T5P2 1943 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 TTC22Q5TAA0 569 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 SEPT14Q6ZU15 432 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 USP38Q8NB14 1042 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 GBF1Q92538 1859 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 PRDM12Q9H4Q4 367 aa18.36■□□□□ 0.53
CLK3-211ENST00000563297 BAZ2BQ9UIF8 2168 aaKnown RBP18.36■□□□□ 0.53
CLK3-211ENST00000563297 KLRF2D3W0D1 207 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 PTPN11Q06124 597 aaPredicted RBP18.35■□□□□ 0.53
CLK3-211ENST00000563297 AFG1LQ8WV93 481 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 MTMR8Q96EF0 704 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 NKX2-4Q9H2Z4 354 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 MAD2L2Q9UI95 211 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 YBX2Q9Y2T7 364 aaKnown RBP18.35■□□□□ 0.53
CLK3-211ENST00000563297 SLC4A7Q9Y6M7 1214 aa18.35■□□□□ 0.53
CLK3-211ENST00000563297 MYH7BA7E2Y1 1941 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 PALM3A6NDB9 673 aaPredicted RBP18.34■□□□□ 0.53
CLK3-211ENST00000563297 OPLAHO14841 1288 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 CFBP00751 764 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 GH1P01241 217 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 RABGGTBP53611 331 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 PTH1RQ03431 593 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 ARHGAP1Q07960 439 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 ARHGEF16Q5VV41 709 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 DEFB128Q7Z7B8 93 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 GAS2L1Q99501 681 aaPredicted RBP18.34■□□□□ 0.53
CLK3-211ENST00000563297 AMNQ9BXJ7 453 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 SLC28A3Q9HAS3 691 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 TET1Q8NFU7 2136 aa18.34■□□□□ 0.53
CLK3-211ENST00000563297 PPP1R11O60927 126 aaPredicted RBP18.33■□□□□ 0.52
CLK3-211ENST00000563297 EIF3JO75822 258 aaKnown RBP18.33■□□□□ 0.52
CLK3-211ENST00000563297 NR3C2P08235 984 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 PFKMP08237 780 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 MMP3P08254 477 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 CYP21A2P08686 494 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 IQCF3P0C7M6 154 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 EIF2AK2P19525 551 aaKnown RBP18.33■□□□□ 0.52
CLK3-211ENST00000563297 CHMLP26374 656 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 HSD17B4P51659 736 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 GHRHRQ02643 423 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 ADGRE1Q14246 886 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 CHST3Q7LGC8 479 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 PXMP2Q9NR77 195 aa18.33■□□□□ 0.52
CLK3-211ENST00000563297 DDX41Q9UJV9 622 aaKnown RBP18.33■□□□□ 0.52
CLK3-211ENST00000563297 ZBBXA8MT70 800 aa18.32■□□□□ 0.52
CLK3-211ENST00000563297 PITPNM1O00562 1244 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms