RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 FPGSQ05932 587 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 ITGA7Q13683 1181 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 SHHQ15465 462 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 STXBP2Q15833 593 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 RNF20Q5VTR2 975 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 CREB3L3Q68CJ9 461 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 NFXL1Q6ZNB6 911 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 SAMD3Q8N6K7 520 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 CTCFLQ8NI51 663 aaPredicted RBP19.55■□□□□ 0.72
CLK3-210ENST00000563112 TMEM87BQ96K49 555 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 PIGSQ96S52 555 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 ITGB8P26012 769 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 KIF5BP33176 963 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 SKAP1Q86WV1 359 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 FAM126BQ8IXS8 530 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 MAP3K14Q99558 947 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 LY9Q9HBG7 655 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 COL20A1Q9P218 1284 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 TBX21Q9UL17 535 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 BAZ2BQ9UIF8 2168 aaKnown RBP19.54■□□□□ 0.72
CLK3-210ENST00000563112 SZT2Q5T011 3432 aa19.54■□□□□ 0.72
CLK3-210ENST00000563112 PNMA6FA0A0J9YX94 578 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 CCDC69A6NI79 296 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 KPNA6O60684 536 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 DDAH1O94760 285 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 MYL3P08590 195 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 HSD17B4P51659 736 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 NECTIN1Q15223 517 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 C9orf50Q5SZB4 431 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 SEPT14Q6ZU15 432 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 ZNF654Q8IZM8 581 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 SLC43A3Q8NBI5 491 aa19.53■□□□□ 0.72
CLK3-210ENST00000563112 PPP1R11O60927 126 aaPredicted RBP19.52■□□□□ 0.72
CLK3-210ENST00000563112 CDC45O75419 566 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 EIF3JO75822 258 aaKnown RBP19.52■□□□□ 0.72
CLK3-210ENST00000563112 EIF2AK2P19525 551 aaKnown RBP19.52■□□□□ 0.72
CLK3-210ENST00000563112 GHRHRQ02643 423 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 MFSD5Q6N075 450 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 DEFB123Q8N688 67 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 LZTS2Q9BRK4 669 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 MTG1Q9BT17 334 aaPredicted RBP19.52■□□□□ 0.72
CLK3-210ENST00000563112 PXMP2Q9NR77 195 aa19.52■□□□□ 0.72
CLK3-210ENST00000563112 LAMA3Q16787 3333 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 GCOM1H8Y6P7 765 aaPredicted RBP19.51■□□□□ 0.71
CLK3-210ENST00000563112 SH2B2O14492 632 aaPredicted RBP19.51■□□□□ 0.71
CLK3-210ENST00000563112 CYTH3O43739 400 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 CD4P01730 458 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 NR3C2P08235 984 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 POLR2MP0CAP2 368 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 CALM1P0DP23 149 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 CALM2P0DP24 149 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 CALM3P0DP25 149 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 SMARCA1P28370 1054 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 GNAQP50148 359 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 PSMC6P62333 389 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 PPIGQ13427 754 aaKnown RBP eCLIP19.51■□□□□ 0.712e-13■■■■□ 22.4
CLK3-210ENST00000563112 SLC35G1Q2M3R5 365 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 TMEM199Q8N511 208 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 COPS5Q92905 334 aa19.51■□□□□ 0.71
CLK3-210ENST00000563112 A6NJR5 290 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 OPLAHO14841 1288 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 GH1P01241 217 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 LIFRP42702 1097 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 PURAQ00577 322 aaKnown RBP19.5■□□□□ 0.71
CLK3-210ENST00000563112 CCDC62Q6P9F0 684 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 PIBF1Q8WXW3 757 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 RRP36Q96EU6 259 aaKnown RBP19.5■□□□□ 0.71
CLK3-210ENST00000563112 RNPC3Q96LT9 517 aaKnown RBP19.5■□□□□ 0.71
CLK3-210ENST00000563112 MYL10Q9BUA6 226 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 PPP1R12CQ9BZL4 782 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 SEC63Q9UGP8 760 aaKnown RBP19.5■□□□□ 0.71
CLK3-210ENST00000563112 GRIN2DO15399 1336 aa19.5■□□□□ 0.71
CLK3-210ENST00000563112 ARIH2O95376 493 aa19.49■□□□□ 0.71
CLK3-210ENST00000563112 NEFLP07196 543 aa19.49■□□□□ 0.71
CLK3-210ENST00000563112 MYCLP12524 364 aaPredicted RBP19.49■□□□□ 0.71
CLK3-210ENST00000563112 HOXA13P31271 388 aaPredicted RBP19.49■□□□□ 0.71
CLK3-210ENST00000563112 SPZ1Q9BXG8 430 aa19.49■□□□□ 0.71
CLK3-210ENST00000563112 SLC12A7Q9Y666 1083 aa19.49■□□□□ 0.71
CLK3-210ENST00000563112 SUPT20HL2P0C7V6 817 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 EPHB4P54760 987 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 LY6KQ17RY6 165 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 SYNE3Q6ZMZ3 975 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 Q7L0L9 218 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 FCHSD1Q86WN1 690 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 NEK1Q96PY6 1258 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 PDCD2LQ9BRP1 358 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 TRPV6Q9H1D0 765 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 HIPK3Q9H422 1215 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 MRVI1Q9Y6F6 885 aa19.48■□□□□ 0.71
CLK3-210ENST00000563112 KIAA1217Q5T5P2 1943 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 B4GALT4O60513 344 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 CYP2C18P33260 490 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 FAM47CQ5HY64 1035 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 FAM109BQ6ICB4 259 aaPredicted RBP19.47■□□□□ 0.71
CLK3-210ENST00000563112 KCNV1Q6PIU1 500 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 VSIG10LQ86VR7 867 aa19.47■□□□□ 0.71
CLK3-210ENST00000563112 ALDH8A1Q9H2A2 487 aaPredicted RBP19.47■□□□□ 0.71
CLK3-210ENST00000563112 DDX41Q9UJV9 622 aaKnown RBP19.47■□□□□ 0.71
CLK3-210ENST00000563112 CSF2RAP15509 400 aa19.46■□□□□ 0.71
CLK3-210ENST00000563112 CASTP20810 708 aaKnown RBP19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms