RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 Q4G0T1 1027 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 CCAR1Q8IX12 1150 aaKnown RBP15.81■□□□□ 0.12
CLK3-209ENST00000562670 FSIP1Q8NA03 581 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 SHCBP1Q8NEM2 672 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 ENGASEQ8NFI3 743 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 SYTL5Q8TDW5 730 aaPredicted RBP15.81■□□□□ 0.12
CLK3-209ENST00000562670 MTMR9Q96QG7 549 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 BTBD7Q9P203 1132 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 RIPK3Q9Y572 518 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 TDP2O95551 362 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 LIG1P18858 919 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 GCLCP48506 637 aaPredicted RBP15.8■□□□□ 0.12
CLK3-209ENST00000562670 RPS6P62753 249 aaKnown RBP15.8■□□□□ 0.12
CLK3-209ENST00000562670 CCDC183Q5T5S1 534 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 XRRA1Q6P2D8 792 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 SHC4Q6S5L8 630 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 RNF207Q6ZRF8 634 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 AK8Q96MA6 479 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 PARK7Q99497 189 aaKnown RBP15.8■□□□□ 0.12
CLK3-209ENST00000562670 TMEM60Q9H2L4 133 aa15.8■□□□□ 0.12
CLK3-209ENST00000562670 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.8■□□□□ 0.12
CLK3-209ENST00000562670 DDX25Q9UHL0 483 aaKnown RBP15.8■□□□□ 0.12
CLK3-209ENST00000562670 TMEM88BA6NKF7 163 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 PDHXO00330 501 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 SLC37A4O43826 429 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 FXR2P51116 673 aaKnown RBP eCLIP15.79■□□□□ 0.12
CLK3-209ENST00000562670 ZNF157P51786 506 aaPredicted RBP15.79■□□□□ 0.12
CLK3-209ENST00000562670 INHBEP58166 350 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 CALCRLQ16602 461 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 CAVIN1Q6NZI2 390 aaKnown RBP15.79■□□□□ 0.12
CLK3-209ENST00000562670 SLC30A10Q6XR72 485 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 DTHD1Q6ZMT9 781 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 NIPA1Q7RTP0 329 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 POTEDQ86YR6 584 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 FMR1NBQ8N0W7 255 aaPredicted RBP15.79■□□□□ 0.12
CLK3-209ENST00000562670 TBC1D5Q92609 795 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 CCDC102AQ96A19 550 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 PYM1Q9BRP8 204 aaKnown RBP15.79■□□□□ 0.12
CLK3-209ENST00000562670 GOLPH3LQ9H4A5 285 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 KCNMB3Q9NPA1 279 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 HOMER2Q9NSB8 354 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 CYP39A1Q9NYL5 469 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 TMEM63CQ9P1W3 806 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 COL20A1Q9P218 1284 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 RBPJLQ9UBG7 517 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 MORF4L1Q9UBU8 362 aa15.79■□□□□ 0.12
CLK3-209ENST00000562670 PFKFB1P16118 471 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 SETQ01105 290 aaPredicted RBP15.78■□□□□ 0.12
CLK3-209ENST00000562670 SNW1Q13573 536 aaKnown RBP15.78■□□□□ 0.12
CLK3-209ENST00000562670 PCNX4Q63HM2 1172 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 FCHSD1Q86WN1 690 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 SLFN12Q8IYM2 578 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 LENG9Q96B70 501 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 TIGD1Q96MW7 591 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 CLIC6Q96NY7 704 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 MOV10L1Q9BXT6 1211 aaKnown RBP15.78■□□□□ 0.12
CLK3-209ENST00000562670 CSRNP2Q9H175 543 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 MROH8Q9H579 483 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 A1CFQ9NQ94 594 aaKnown RBP15.78■□□□□ 0.12
CLK3-209ENST00000562670 DACT1Q9NYF0 836 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 FAM13BQ9NYF5 915 aa15.78■□□□□ 0.12
CLK3-209ENST00000562670 LCTP09848 1927 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 IGLV3-22A0A075B6J6 115 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 VWA3AA6NCI4 1184 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 FAM155AB1AL88 458 aaPredicted RBP15.77■□□□□ 0.12
CLK3-209ENST00000562670 SLC26A4O43511 780 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 KINO60870 393 aaKnown RBP15.77■□□□□ 0.12
CLK3-209ENST00000562670 NR1I2O75469 434 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 LETM1O95202 739 aaPredicted RBP15.77■□□□□ 0.12
CLK3-209ENST00000562670 BCRP11274 1271 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 NDUFA8P51970 172 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 ERVK-9P63128 1117 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 ERVK-24P63145 666 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 GRIN1Q05586 938 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 PLS1Q14651 629 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 NSMFQ6X4W1 530 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 ELOA2Q8IYF1 753 aaPredicted RBP15.77■□□□□ 0.12
CLK3-209ENST00000562670 FAM43AQ8N2R8 423 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 IGSF22Q8N9C0 903 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 DNERQ8NFT8 737 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 ETNPPLQ8TBG4 499 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 SMCR8Q8TEV9 937 aaPredicted RBP15.77■□□□□ 0.12
CLK3-209ENST00000562670 FAM20AQ96MK3 541 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 RAB34Q9BZG1 259 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 CLSTN2Q9H4D0 955 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 TXNRD2Q9NNW7 524 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 PXMP2Q9NR77 195 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 MRVI1Q9Y6F6 885 aa15.77■□□□□ 0.12
CLK3-209ENST00000562670 ADGRA2Q96PE1 1338 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 ZNF236Q9UL36 1845 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 LOC102724159A0A0B4J2E5 919 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 A0A1B0GVL5 298 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 FAM86B1E9PN63 330 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 CTAGE5O15320 804 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 STAM2O75886 525 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 FAM86B2P0C5J1 330 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 CCNA1P78396 465 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 SREBF2Q12772 1141 aa15.76■□□□□ 0.11
CLK3-209ENST00000562670 BAATQ14032 418 aaPredicted RBP15.76■□□□□ 0.11
CLK3-209ENST00000562670 PDIA5Q14554 519 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms