RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 STXBP3O00186 592 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 ERLIN2O94905 339 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 KLRK1P26718 216 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 ERFEQ4G0M1 354 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 HAUS3Q68CZ6 603 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 EMBQ6PCB8 327 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 C3orf67Q6ZVT6 689 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 ZNF572Q7Z3I7 529 aaPredicted RBP15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 DAGLBQ8NCG7 672 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 KIAA0895Q8NCT3 520 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 DYNLL2Q96FJ2 89 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 CALML4Q96GE6 196 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 STX8Q9UNK0 236 aa15.5■□□□□ 0.07
VPS9D1-202ENST00000561976 USP17L3A6NCW0 530 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 USP17L4A6NCW7 530 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 BUB1O43683 1085 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 GOLGA8HP0CJ92 632 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 HNRNPH3P31942 346 aaKnown RBP15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 NAPAP54920 295 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 ATP2B2Q01814 1243 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 ALS2CLQ60I27 953 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 USP17L1Q7RTZ2 530 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 CACNA2D4Q7Z3S7 1137 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 ARL8AQ96BM9 186 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 CYTH3O43739 400 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 TSPY3P0CV98 308 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 TSPY8P0CW00 308 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 DNA2P51530 1060 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 RASSF7Q02833 373 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 CCDC84Q86UT8 332 aaPredicted RBP15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 SH3GL2Q99962 352 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 TANGO6Q9C0B7 1094 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 SIK3Q9Y2K2 1263 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 SAMM50Q9Y512 469 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 COL4A1P02462 1669 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 A0A1B0GUL6 1792 aa15.49■□□□□ 0.07
VPS9D1-202ENST00000561976 CPP00450 1065 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 NONOQ15233 471 aaKnown RBP eCLIP15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 TDRD12Q587J7 1177 aaKnown RBP15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 RBM12Q9NTZ6 932 aaKnown RBP15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 GFPT1Q06210 699 aaPredicted RBP15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 MAN2A1Q16706 1144 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 SLC35G1Q2M3R5 365 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 KCTD16Q68DU8 428 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 SV2BQ7L1I2 683 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 DYMQ7RTS9 669 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 KRT25Q7Z3Z0 450 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 FBXO33Q7Z6M2 555 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 DZIP1Q86YF9 867 aaKnown RBP15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 NOX5Q96PH1 765 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 CPVLQ9H3G5 476 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 GRIN2DO15399 1336 aa15.48■□□□□ 0.07
VPS9D1-202ENST00000561976 FGFR1OPO95684 399 aaKnown RBP15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 HIBADHP31937 336 aaKnown RBP15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 TTMPQ5BVD1 217 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 CENPPQ6IPU0 288 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 CELF1Q92879 486 aaKnown RBP15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 MS4A14Q96JA4 679 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 SALL4Q9UJQ4 1053 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 ZNF652Q9Y2D9 606 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 MYH10P35580 1976 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 TXKP42681 527 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 ATP1A2P50993 1020 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 PDCLQ13371 301 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 CFAP221Q4G0U5 840 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 ZNF444Q8N0Y2 327 aaPredicted RBP15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 IFT81Q8WYA0 676 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 ACSBG1Q96GR2 724 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 ZIM3Q96PE6 472 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 SMCO2A6NFE2 343 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 NDUFAB1O14561 156 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 LCA5LO95447 670 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 BICDL1Q6ZP65 573 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 NEK8Q86SG6 692 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 IFT20Q8IY31 132 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 SH2D3CQ8N5H7 860 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 CAVIN3Q969G5 261 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 MTMR8Q96EF0 704 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 CDK5RAP3Q96JB5 506 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 TLR10Q9BXR5 811 aa15.47■□□□□ 0.07
VPS9D1-202ENST00000561976 KLRF2D3W0D1 207 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 ZEB2O60315 1214 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 KRT14P02533 472 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 EPB41P11171 864 aaKnown RBP15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 INPP5BP32019 993 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 SLC1A4P43007 532 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 CFAP58Q5T655 872 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 C12orf60Q5U649 245 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 CCDC43Q96MW1 224 aaKnown RBP15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 C6orf50Q9HD87 102 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 NFU1Q9UMS0 254 aa15.46■□□□□ 0.07
VPS9D1-202ENST00000561976 NNTQ13423 1086 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 SOGA3Q5TF21 947 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 KLHDC7AQ5VTJ3 777 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 MMS22LQ6ZRQ5 1243 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 VAT1LQ9HCJ6 419 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 EPB41L5Q9HCM4 733 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 NLRC4Q9NPP4 1024 aa15.46■□□□□ 0.06
VPS9D1-202ENST00000561976 CASZ1Q86V15 1759 aa15.45■□□□□ 0.06
VPS9D1-202ENST00000561976 LOC102724428A0A0B4J2F2 783 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms