RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 USH1GQ495M9 461 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 PPP1R13LQ8WUF5 828 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 TIFAQ96CG3 184 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 IL25Q9H293 177 aa13.65□□□□□ -0.22
USP3-220ENST00000561381 CXXC1Q9P0U4 656 aaPredicted RBP13.65□□□□□ -0.22
USP3-220ENST00000561381 WDR19Q8NEZ3 1342 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 RBM47A0AV96 593 aaKnown RBP13.64□□□□□ -0.23
USP3-220ENST00000561381 EDNRBP24530 442 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 DGKHQ86XP1 1220 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
USP3-220ENST00000561381 PNMA1Q8ND90 353 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 TBC1D5Q92609 795 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 COPS5Q92905 334 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 NOC4LQ9BVI4 516 aaKnown RBP13.64□□□□□ -0.23
USP3-220ENST00000561381 PBX4Q9BYU1 374 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 WNT8AQ9H1J5 351 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 ZNF576Q9H609 170 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 IL23AQ9NPF7 189 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 TRMT13Q9NUP7 481 aaKnown RBP13.64□□□□□ -0.23
USP3-220ENST00000561381 PCDHB8Q9UN66 801 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 PRUNE2Q8WUY3 3088 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 LAMA4Q16363 1823 aa13.64□□□□□ -0.23
USP3-220ENST00000561381 LOC102724159A0A0B4J2E5 919 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 MYL3P08590 195 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 CYP2C9P11712 490 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 PURAQ00577 322 aaKnown RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 PDE4DQ08499 809 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 PWP2Q15269 919 aaKnown RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 CDC37Q16543 378 aaPredicted RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 GPATCH4Q5T3I0 446 aaKnown RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 PSRC1Q6PGN9 363 aaPredicted RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 IQCA1Q86XH1 822 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 ENAHQ8N8S7 591 aaPredicted RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 OR6J1Q8NGC5 347 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 HERVK_113Q902F9 699 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 VWCEQ96DN2 955 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 ZSCAN10Q96SZ4 725 aaPredicted RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 ALDH8A1Q9H2A2 487 aaPredicted RBP13.63□□□□□ -0.23
USP3-220ENST00000561381 ZSWIM5Q9P217 1185 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 MYO9BQ13459 2157 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 CUL9Q8IWT3 2517 aa13.63□□□□□ -0.23
USP3-220ENST00000561381 ARIH2O95376 493 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 PPP2R5BQ15173 497 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 OTOP2Q7RTS6 562 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 ADGRF4Q8IZF3 695 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 USP38Q8NB14 1042 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 DNERQ8NFT8 737 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 ANKS1AQ92625 1134 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 SCLYQ96I15 445 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 DSCC1Q9BVC3 393 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 KAT14Q9H8E8 782 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 COL20A1Q9P218 1284 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 PNMA2Q9UL42 364 aa13.62□□□□□ -0.23
USP3-220ENST00000561381 HIP1O00291 1037 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 FGBP02675 491 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 CPT1AP50416 773 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 SCFD2Q8WU76 684 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 TAAR1Q96RJ0 339 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 MTG1Q9BT17 334 aaPredicted RBP13.61□□□□□ -0.23
USP3-220ENST00000561381 VAT1LQ9HCJ6 419 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 POLR3EQ9NVU0 708 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 TNKSO95271 1327 aa13.61□□□□□ -0.23
USP3-220ENST00000561381 SCN10AQ9Y5Y9 1956 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 TXNP10599 105 aaKnown RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 GSPT1P15170 499 aaKnown RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 PDE4AP27815 886 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 IMMTQ16891 758 aaKnown RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 QRICH1Q2TAL8 776 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 NBPF20Q3BBV1 942 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 CCDC178Q5BJE1 867 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 RGS22Q8NE09 1264 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 SYTL5Q8TDW5 730 aaPredicted RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 SEZ6LQ9BYH1 1024 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 NKX2-4Q9H2Z4 354 aa13.6□□□□□ -0.23
USP3-220ENST00000561381 GPHNQ9NQX3 736 aaPredicted RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 YBX2Q9Y2T7 364 aaKnown RBP13.6□□□□□ -0.23
USP3-220ENST00000561381 A6NJR5 290 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 NKRFO15226 690 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP3-220ENST00000561381 DHX16O60231 1041 aaKnown RBP13.59□□□□□ -0.23
USP3-220ENST00000561381 PARP1P09874 1014 aaKnown RBP13.59□□□□□ -0.23
USP3-220ENST00000561381 RABGGTBP53611 331 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 ASPRV1Q53RT3 343 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 FAM47CQ5HY64 1035 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 CCDC62Q6P9F0 684 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 SEPT14Q6ZU15 432 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 STAG2Q8N3U4 1231 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 MPHOSPH6Q99547 160 aaKnown RBP13.59□□□□□ -0.23
USP3-220ENST00000561381 KRT23Q9C075 422 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 PRDM12Q9H4Q4 367 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 JMJD4Q9H9V9 463 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 PRDM6Q9NQX0 595 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 CTNNA3Q9UI47 895 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 SCN5AQ14524 2016 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 ABCB11O95342 1321 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 GBF1Q92538 1859 aa13.59□□□□□ -0.23
USP3-220ENST00000561381 VCANP13611 3396 aa13.58□□□□□ -0.23
USP3-220ENST00000561381 RBAK-RBAKDNI3L0D1 243 aa13.58□□□□□ -0.24
USP3-220ENST00000561381 SUPT20HL2P0C7V6 817 aa13.58□□□□□ -0.24
USP3-220ENST00000561381 MYOGP15173 224 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms