RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 NFKB2Q00653 900 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 C21orf62-AS1Q17RA5 79 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 FOXB2Q5VYV0 432 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 TMC6Q7Z403 805 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 PPFIBP1Q86W92 1011 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 LDHDQ86WU2 507 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 THNSL2Q86YJ6 484 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 PRDM14Q9GZV8 571 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13C-210ENST00000561258 ADAM7Q9H2U9 754 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 SUSD2Q9UGT4 822 aa6.91□□□□□ -1.3
VPS13C-210ENST00000561258 CCDC163A0A0D9SF12 145 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 MEIS1O00470 390 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 ABLIM1O14639 778 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 KCNQ2O43526 872 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 SIGLEC6O43699 453 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 RFPL3O75679 317 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 MPOP05164 745 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 PDGFRBP09619 1106 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 POU3F3P20264 500 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-210ENST00000561258 ZNF143P52747 638 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-210ENST00000561258 NCKAP1LP55160 1127 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 OLFML2BQ68BL8 750 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 GALNT18Q6P9A2 607 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 NIM1KQ8IY84 436 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 TMEM192Q8IY95 271 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 KISS1RQ969F8 398 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-210ENST00000561258 EXOC2Q96KP1 924 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 FCRL2Q96LA5 508 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-210ENST00000561258 SLC6A18Q96N87 628 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 ARHGEF4Q9NR80 690 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 TNFRSF10DQ9UBN6 386 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 TAF6LQ9Y6J9 622 aa6.9□□□□□ -1.3
VPS13C-210ENST00000561258 A0A087X0B3 334 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 A0A1W2PQU0 124 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 NUDT19A8MXV4 375 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 PRKCAP17252 672 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 STAT3P40763 770 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 CEBPAP49715 358 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 PABPC4Q13310 644 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 CBX2Q14781 532 aaPredicted RBP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 RAB3GAP1Q15042 981 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 DHX37Q8IY37 1157 aaKnown RBP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 DHRS1Q96LJ7 313 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 PWWP2AQ96N64 755 aa6.89□□□□□ -1.31
VPS13C-210ENST00000561258 NCOA5Q9HCD5 579 aaKnown RBP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 SUCOQ9UBS9 1254 aaKnown RBP6.89□□□□□ -1.31
VPS13C-210ENST00000561258 WTIPA6NIX2 430 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-210ENST00000561258 AGRPO00253 132 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 S100BP04271 92 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-210ENST00000561258 NAT2P11245 290 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 L1CAMP32004 1257 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 SLCO6A1Q86UG4 719 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 SP8Q8IXZ3 490 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 PRPF38AQ8NAV1 312 aaKnown RBP6.88□□□□□ -1.31
VPS13C-210ENST00000561258 TP53I13Q8NBR0 393 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-210ENST00000561258 CHAC2Q8WUX2 184 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 FAM126AQ9BYI3 521 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-210ENST00000561258 CHST7Q9NS84 486 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 ERVK13-1Q9NX77 482 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 PCDHA5Q9Y5H7 936 aa6.88□□□□□ -1.31
VPS13C-210ENST00000561258 ANKRD34BA5PLL1 514 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 PLD2O14939 933 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 BUB1BO60566 1050 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 MYCLP1P12525 358 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 ARL4AP40617 200 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 CDKN1CP49918 316 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 CYP4F8P98187 520 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 SV2CQ496J9 727 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 FAM209AQ5JX71 171 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 CCDC181Q5TID7 509 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 TDRD10Q5VZ19 366 aaKnown RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 JAMLQ86YT9 394 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 LINC01356Q8N9X3 169 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 NUP43Q8NFH3 380 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 HAUS7Q99871 368 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 DHRS4Q9BTZ2 278 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 CDADC1Q9BWV3 514 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 TNFRSF12AQ9NP84 129 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 LUC7LQ9NQ29 371 aaKnown RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 CHPF2Q9P2E5 772 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 ATP8A1Q9Y2Q0 1164 aa6.87□□□□□ -1.31
VPS13C-210ENST00000561258 MRPS23Q9Y3D9 190 aaKnown RBP6.87□□□□□ -1.31
VPS13C-210ENST00000561258 ERCC6Q03468 1493 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 TRAV20A0A0B4J274 112 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 C9IYK1 514 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 CBFA2T2O43439 604 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 CLEC3AO75596 197 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 EPHX1P07099 455 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 CNGA1P29973 690 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 CTSKP43235 329 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 LAPTM5Q13571 262 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 FNDC3BQ53EP0 1204 aaKnown RBP6.86□□□□□ -1.31
VPS13C-210ENST00000561258 YOD1Q5VVQ6 348 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-210ENST00000561258 ZNF513Q8N8E2 541 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-210ENST00000561258 SMARCC1Q92922 1105 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-210ENST00000561258 TEPSINQ96N21 525 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 IER2Q9BTL4 223 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 KRTAP17-1Q9BYP8 105 aa6.86□□□□□ -1.31
VPS13C-210ENST00000561258 KLHL25Q9H0H3 589 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms