RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GCNT3O95395 438 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 JAG1P78504 1218 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CNTN2Q02246 1040 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 FAM160A1Q05DH4 1040 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 RESTQ13127 1097 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 MTMR1Q13613 665 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 RRP1BQ14684 758 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TREML2Q5T2D2 321 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 PDXDC2PQ6P474 469 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 RBM46Q8TBY0 533 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 SPC25Q9HBM1 224 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 ADD3Q9UEY8 706 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 ZDHHC9Q9Y397 364 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TAF1P21675 1872 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CNTNAP5Q8WYK1 1306 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 AFDNP55196 1824 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 DYNC1LI2O43237 492 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 OSTNP61366 133 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 GRIN1Q05586 938 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TYRO3Q06418 890 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 MCM6Q14566 821 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TSGA10IPQ3SY00 556 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CT47A1Q5JQC4 288 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 HAUS3Q68CZ6 603 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CYFIP1Q7L576 1253 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 ZNF830Q96NB3 372 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TEKT3Q9BXF9 490 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 BHMT2Q9H2M3 363 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 SLC5A4Q9NY91 659 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 ANAPC4Q9UJX5 808 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TMX2Q9Y320 296 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 POTEB3A0JP26 581 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 POTECB2RU33 542 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 TBC1D8O95759 1140 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 C6orf222P0C671 652 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 CETPP11597 493 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 HERVK_113P62684 666 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 POTEBQ6S5H4 581 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 LINC00301Q8NCQ3 95 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 KLRG1Q96E93 195 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 CEP170P1Q96L14 293 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 NAP1L5Q96NT1 182 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 CEP89Q96ST8 783 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 ASCC2Q9H1I8 757 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 DACH1Q9UI36 760 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 CTNND2Q9UQB3 1225 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 POTEFA5A3E0 1075 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 N4BP3O15049 544 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 CUTAO60888 179 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 KIF20AO95235 890 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 NFX1Q12986 1120 aaKnown RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 DEFB115Q30KQ5 88 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 GJC2Q5T442 439 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 TYW1BQ6NUM6 668 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 POTEGQ6S5H5 508 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 POTEEQ6S8J3 1075 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 NSUN6Q8TEA1 469 aaKnown RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 LPAR1Q92633 364 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 FERMT2Q96AC1 680 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 TSG101Q99816 390 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 GLT8D2Q9H1C3 349 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 FOXP1Q9H334 677 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 DEF6Q9H4E7 631 aa6.09□□□□□ -1.43
VPS13C-209ENST00000560637 MRPL44Q9H9J2 332 aaKnown RBP6.09□□□□□ -1.43
VPS13C-209ENST00000560637 C19orf81C9J6K1 198 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 E9PMD0 336 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 PHACTR2O75167 634 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 LETM1O95202 739 aaPredicted RBP6.09□□□□□ -1.44
VPS13C-209ENST00000560637 FOSP01100 380 aaPredicted RBP6.09□□□□□ -1.44
VPS13C-209ENST00000560637 NR3C2P08235 984 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 MYL3P08590 195 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 SRGAP2CP0DJJ0 459 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 TNNT1P13805 278 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 MRE11P49959 708 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 POLGP54098 1239 aaPredicted RBP6.09□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM62Q0P6H9 643 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 ST3GAL1Q11201 340 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 EARS2Q5JPH6 523 aaKnown RBP6.09□□□□□ -1.44
VPS13C-209ENST00000560637 PRAMEF19Q5SWL8 479 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 PPFIBP1Q86W92 1011 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 FBXO16Q8IX29 292 aaPredicted RBP6.09□□□□□ -1.44
VPS13C-209ENST00000560637 GPRC5AQ8NFJ5 357 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 GPT2Q8TD30 523 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 NLRP4Q96MN2 994 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 AP5M1Q9H0R1 490 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 VPS16Q9H269 839 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 TMEM60Q9H2L4 133 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 PCDHB13Q9Y5F0 798 aa6.09□□□□□ -1.44
VPS13C-209ENST00000560637 ITGB4P16144 1822 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 ELP1O95163 1332 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 STXBP3O00186 592 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 IPO5O00410 1097 aaKnown RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 FOXN1O15353 648 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 AOC2O75106 756 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 USP2O75604 605 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 TXNP10599 105 aaKnown RBP6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PTGS1P23219 599 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 CYP2J2P51589 502 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 PRELPP51888 382 aa6.08□□□□□ -1.44
VPS13C-209ENST00000560637 SLC39A14Q15043 492 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms