RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 SNX21Q969T3 373 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 NUP88Q99567 741 aaPredicted RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 TMEM47Q9BQJ4 181 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 ZNF341Q9BYN7 854 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 AGXT2Q9BYV1 514 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 ALG2Q9H553 416 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 KAT14Q9H8E8 782 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 ELP3Q9H9T3 547 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 MTMR4Q9NYA4 1195 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 CLIP2Q9UDT6 1046 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 SERTAD1Q9UHV2 236 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 HERC5Q9UII4 1024 aaKnown RBP6.1□□□□□ -1.43
SPG11-220ENST00000559933 PPP2R3BQ9Y5P8 575 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 SNCAIPQ9Y6H5 919 aa6.1□□□□□ -1.43
SPG11-220ENST00000559933 WDR19Q8NEZ3 1342 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 hCG_1642624A0A1W2PR95 340 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 CCDC69A6NI79 296 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 GOLGA8AA7E2F4 631 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 USP17L5A8MUK1 530 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 PIK3CDO00329 1044 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 CELF2O95319 508 aaKnown RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 PDIA3P30101 505 aaKnown RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 SMTNP53814 917 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 SNAP25P60880 206 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 DCAF15Q66K64 600 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 TTBK2Q6IQ55 1244 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 USP17L2Q6R6M4 530 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 TMEM179Q6ZVK1 233 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 CDC37L1Q7L3B6 337 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 NBPF11Q86T75 865 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 IQCA1Q86XH1 822 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 TRIM50Q86XT4 487 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 FOXP4Q8IVH2 680 aaPredicted RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 SCYL3Q8IZE3 742 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 STAG2Q8N3U4 1231 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 CCDC82Q8N4S0 544 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 WHAMMQ8TF30 809 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 GTF3C6Q969F1 213 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 KLRG1Q96E93 195 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 DDX11Q96FC9 970 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 TMEM87BQ96K49 555 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 CFHR5Q9BXR6 569 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 SLKQ9H2G2 1235 aaPredicted RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 RUBCNLQ9H714 662 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 ISY1Q9ULR0 285 aaKnown RBP6.09□□□□□ -1.43
SPG11-220ENST00000559933 LIMCH1Q9UPQ0 1083 aa6.09□□□□□ -1.43
SPG11-220ENST00000559933 ERICH2A1L162 156 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PTPDC1A2A3K4 754 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 TRIM75PA6NK02 468 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 ZBTB43O43298 467 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PFKFB2O60825 505 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 TTLL1O95922 423 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PCP11498 1178 aaKnown RBP6.08□□□□□ -1.44
SPG11-220ENST00000559933 PTPRAP18433 802 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 MAP2K3P46734 347 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 NOVP48745 357 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 METAP2P50579 478 aaKnown RBP eCLIP6.08□□□□□ -1.44
SPG11-220ENST00000559933 TROAPQ12815 778 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PKP1Q13835 747 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 SART3Q15020 963 aaKnown RBP6.08□□□□□ -1.44
SPG11-220ENST00000559933 CCDC96Q2M329 555 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 SUPT20HL1Q3ZLR7 823 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 CST9Q5W186 159 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 LYPD4Q6UWN0 246 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 KCTD1Q719H9 257 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 SGMS1Q86VZ5 419 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 TMEM151AQ8N4L1 468 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 C1orf216Q8TAB5 229 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PHKBQ93100 1093 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 SCARF2Q96GP6 870 aaPredicted RBP6.08□□□□□ -1.44
SPG11-220ENST00000559933 AIFM3Q96NN9 605 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 IPO9Q96P70 1041 aaKnown RBP6.08□□□□□ -1.44
SPG11-220ENST00000559933 UBA5Q9GZZ9 404 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 ALDH8A1Q9H2A2 487 aaPredicted RBP6.08□□□□□ -1.44
SPG11-220ENST00000559933 ZNF287Q9HBT7 754 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 CABP5Q9NP86 173 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 GJB4Q9NTQ9 266 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 TCP11L1Q9NUJ3 509 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 MAD2L2Q9UI95 211 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 ZNF112Q9UJU3 913 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 SLC12A7Q9Y666 1083 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 TRPM7Q96QT4 1865 aa6.08□□□□□ -1.44
SPG11-220ENST00000559933 PTPRFP10586 1907 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CNTNAP5Q8WYK1 1306 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 A6NJY4 79 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CDK2AP1O14519 115 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 PEX10O60683 326 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CTNND1O60716 968 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 NDUFB10O96000 172 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 CELA2BP08218 269 aaPredicted RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 PDHBP11177 359 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 BCRP11274 1271 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 TOP1P11387 765 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 NF2P35240 595 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 SLC16A2P36021 539 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 LIFRP42702 1097 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 IREB2P48200 963 aaKnown RBP6.07□□□□□ -1.44
SPG11-220ENST00000559933 HMGCS2P54868 508 aa6.07□□□□□ -1.44
SPG11-220ENST00000559933 EVCP57679 992 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms