RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 FCHSD1Q86WN1 690 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 CMTR1Q8N1G2 835 aaKnown RBP9.48□□□□□ -0.89
SNX1-207ENST00000559401 CCDC82Q8N4S0 544 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 SCFD2Q8WU76 684 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 JAKMIP1Q96N16 626 aaKnown RBP9.48□□□□□ -0.89
SNX1-207ENST00000559401 MAP3K14Q99558 947 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 LZTS2Q9BRK4 669 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 SPZ1Q9BXG8 430 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 COL20A1Q9P218 1284 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 GNEQ9Y223 722 aaKnown RBP9.48□□□□□ -0.89
SNX1-207ENST00000559401 MKI67P46013 3256 aaKnown RBP9.48□□□□□ -0.89
SNX1-207ENST00000559401 TRIOBPQ9H2D6 2365 aa9.48□□□□□ -0.89
SNX1-207ENST00000559401 A0A0U1RQG5 324 aaPredicted RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 KLF18A0A0U1RQI7 1052 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 GCOM1H8Y6P7 765 aaPredicted RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 OPLAHO14841 1288 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 ZBTB43O43298 467 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 MYL3P08590 195 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 HMGB1P09429 215 aaKnown RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 CLTBP09497 229 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 POLR2MP0CAP2 368 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 TXNP10599 105 aaKnown RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 CPA1P15085 419 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 EDNRBP24530 442 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 HSD17B4P51659 736 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 CHMP4BP1P59074 171 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 TTLL4Q14679 1199 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 STXBP2Q15833 593 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 BRDTQ58F21 947 aaPredicted RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 C1orf53Q5VUE5 145 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 CCSAPQ6IQ19 270 aaPredicted RBP9.47□□□□□ -0.89
SNX1-207ENST00000559401 APOA5Q6Q788 366 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 SEPT14Q6ZU15 432 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 GDF15Q99988 308 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 MAF1Q9H063 256 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 PDLIM7Q9NR12 457 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 PXMP2Q9NR77 195 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 ELP1O95163 1332 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 MROH7Q68CQ1 1323 aa9.47□□□□□ -0.89
SNX1-207ENST00000559401 A0A1W2PPC1 479 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 hCG_1642624A0A1W2PR95 340 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 RBM47A0AV96 593 aaKnown RBP9.46□□□□□ -0.9
SNX1-207ENST00000559401 GOLGA8AA7E2F4 631 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 GOLGA8BA8MQT2 603 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 NKRFO15226 690 aaKnown RBP eCLIP9.46□□□□□ -0.9
SNX1-207ENST00000559401 CTAGE5O15320 804 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 TLR3O15455 904 aaKnown RBP9.46□□□□□ -0.9
SNX1-207ENST00000559401 CABYRO75952 493 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 NR3C2P08235 984 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 RAG1P15918 1043 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 HSPA4P34932 840 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 CPT1AP50416 773 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 RTN1Q16799 776 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 TSGA10IPQ3SY00 556 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 BLOC1S2Q6QNY1 142 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 TMTC3Q6ZXV5 915 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 SH3RF1Q7Z6J0 888 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 SGMS1Q86VZ5 419 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 SRBD1Q8N5C6 995 aaKnown RBP9.46□□□□□ -0.9
SNX1-207ENST00000559401 FANCBQ8NB91 859 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 SMARCC2Q8TAQ2 1214 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 COPS5Q92905 334 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 CUL5Q93034 780 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 IWS1Q96ST2 819 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 TMEM39AQ9NV64 488 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 POLR3EQ9NVU0 708 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 RBM28Q9NW13 759 aaKnown RBP9.46□□□□□ -0.9
SNX1-207ENST00000559401 Q9Y3F1 56 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 SNX14Q9Y5W7 946 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 MRVI1Q9Y6F6 885 aa9.46□□□□□ -0.9
SNX1-207ENST00000559401 MYH7BA7E2Y1 1941 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 TRIM43BA6NCK2 446 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 ARVCFO00192 962 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 EIF3JO75822 258 aaKnown RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 CASTP20810 708 aaKnown RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 SMARCA1P28370 1054 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 CCND2P30279 289 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 BMP8BP34820 402 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 FXR1P51114 621 aaKnown RBP eCLIP9.45□□□□□ -0.9
SNX1-207ENST00000559401 PSMC6P62333 389 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 EXOSC10Q01780 885 aaKnown RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 LY6KQ17RY6 165 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 FAM47CQ5HY64 1035 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 HEATR3Q7Z4Q2 680 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 TDHQ8IZJ6 230 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 SAMD3Q8N6K7 520 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 BADQ92934 168 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 BRF1Q92994 677 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 TRIM43Q96BQ3 446 aaPredicted RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 ZFP91Q96JP5 570 aaPredicted RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 PDCD2LQ9BRP1 358 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 PRO3102Q9H379 93 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 MAP3K20Q9NYL2 800 aaKnown RBP9.45□□□□□ -0.9
SNX1-207ENST00000559401 BRPF3Q9ULD4 1205 aa9.45□□□□□ -0.9
SNX1-207ENST00000559401 SORBS3O60504 671 aa9.44□□□□□ -0.9
SNX1-207ENST00000559401 ARIH2O95376 493 aa9.44□□□□□ -0.9
SNX1-207ENST00000559401 GH1P01241 217 aa9.44□□□□□ -0.9
SNX1-207ENST00000559401 PSMA5P28066 241 aa9.44□□□□□ -0.9
SNX1-207ENST00000559401 METAP2P50579 478 aaKnown RBP eCLIP9.44□□□□□ -0.9
SNX1-207ENST00000559401 NKX3-2P78367 333 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms