RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	HIBADH	P31937	336 aa	Known RBP	18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	SV2B	Q7L1I2	683 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	POTED	Q86YR6	584 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	IFT20	Q8IY31	132 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	C1orf131	Q8NDD1	294 aa	Known RBP	18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	RIN2	Q8WYP3	895 aa	Predicted RBP	18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	NOX5	Q96PH1	765 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	LRRC1	Q9BTT6	524 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	ZNF287	Q9HBT7	754 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	IL17RB	Q9NRM6	502 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	MCM9	Q9NXL9	1143 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	CAPN6	Q9Y6Q1	641 aa		18.06	■□□□□ 0.48
SHMT2-231	ENST00000557433	DOT1L	Q8TEK3	1739 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	RBAK-RBAKDN	I3L0D1	243 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	CYP2D6	P10635	497 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	MAGEA1	P43355	309 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	PSMD2	Q13200	908 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	SLC10A5	Q5PT55	438 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	NEK8	Q86SG6	692 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	SUGP1	Q8IWZ8	645 aa	Known RBP	18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	PROM2	Q8N271	834 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	STAG2	Q8N3U4	1231 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	RIC8A	Q9NPQ8	531 aa		18.05	■□□□□ 0.48
SHMT2-231	ENST00000557433	GRID2IP	A4D2P6	1211 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	hCG_1984214	I3L0E3	225 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	EIF4A3	P38919	411 aa	Known RBP	18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	CFAP221	Q4G0U5	840 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	EMC10	Q5UCC4	262 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	HAUS3	Q68CZ6	603 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	C8orf74	Q6P047	294 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	PACS2	Q86VP3	889 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	CERS3	Q8IU89	383 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	ZNF713	Q8N859	430 aa	Predicted RBP	18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	LRRC15	Q8TF66	581 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	SEMA6B	Q9H3T3	888 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	WNK3	Q9BYP7	1800 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	LOC102724428	A0A0B4J2F2	783 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	ESYT2	A0FGR8	921 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	ZEB2	O60315	1214 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	MOCS3	O95396	460 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	SIK1	P57059	783 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	B4GALNT4	Q76KP1	1039 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	GSPT2	Q8IYD1	628 aa	Known RBP	18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	KIAA0895	Q8NCT3	520 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	PLIN2	Q99541	437 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	TSG101	Q99816	390 aa		18.04	■□□□□ 0.48
SHMT2-231	ENST00000557433	CCDC88A	Q3V6T2	1871 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	ASTE1	Q2TB18	679 aa	Predicted RBP	18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	KRT26	Q7Z3Y9	468 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	MREG	Q8N565	214 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	GDAP1L1	Q96MZ0	367 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	RAB34	Q9BZG1	259 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	YY1AP1	Q9H869	796 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	MKNK2	Q9HBH9	465 aa		18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	DMGDH	Q9UI17	866 aa	Known RBP	18.03	■□□□□ 0.48
SHMT2-231	ENST00000557433	SRRM3	A6NNA2	597 aa	Predicted RBP	18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	CYTH3	O43739	400 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	CCNT1	O60563	726 aa	Known RBP	18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	TSPY3	P0CV98	308 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	TSPY8	P0CW00	308 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	FCER1A	P12319	257 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	FXR2	P51116	673 aa	Known RBP eCLIP	18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	PAK2	Q13177	524 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	SEPT2	Q15019	361 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	SOGA3	Q5TF21	947 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	PDXDC1	Q6P996	788 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	CD302	Q8IX05	232 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	ZNF444	Q8N0Y2	327 aa	Predicted RBP	18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	EIF1AD	Q8N9N8	165 aa	Known RBP	18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	BCAS4	Q8TDM0	211 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	BAP1	Q92560	729 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	MLXIP	Q9HAP2	919 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	COL4A1	P02462	1669 aa		18.02	■□□□□ 0.48
SHMT2-231	ENST00000557433	NAPA	P54920	295 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	GNGT1	P63211	74 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	GSTO1	P78417	241 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	ERFE	Q4G0M1	354 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	DZIP1	Q86YF9	867 aa	Known RBP	18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	MMRN2	Q9H8L6	949 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	GDF3	Q9NR23	364 aa		18.02	■□□□□ 0.47
SHMT2-231	ENST00000557433	GRIN2D	O15399	1336 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	PLEK	P08567	350 aa	Predicted RBP	18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	CCT5	P48643	541 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	TMEM266	Q2M3C6	531 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	LETM2	Q2VYF4	491 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	NFRKB	Q6P4R8	1299 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	MMS22L	Q6ZRQ5	1243 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	RRAGA	Q7L523	313 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	ZFP91	Q96JP5	570 aa	Predicted RBP	18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	MMTAG2	Q9BU76	263 aa	Known RBP	18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	FAM169A	Q9Y6X4	670 aa		18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	BAZ2B	Q9UIF8	2168 aa	Known RBP	18.01	■□□□□ 0.47
SHMT2-231	ENST00000557433	LRRC53	A6NM62	1247 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	KLRF2	D3W0D1	207 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	ERLIN2	O94905	339 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	USP8	P40818	1118 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	EVX2	Q03828	476 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	PDIA5	Q14554	519 aa		18	■□□□□ 0.47
SHMT2-231	ENST00000557433	SLC35G1	Q2M3R5	365 aa		18	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms