RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 RBM27Q9P2N5 1060 aaKnown RBP14.4□□□□□ -0.1
SLIRP-209ENST00000557342 Q9Y3F1 56 aa14.4□□□□□ -0.1
SLIRP-209ENST00000557342 MYH7BA7E2Y1 1941 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 RBM47A0AV96 593 aaKnown RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 PIK3CDO00329 1044 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 EVI5O60447 810 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 CST5P28325 142 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 HOXA13P31271 388 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 GJA9P57773 515 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 FUT2Q10981 343 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 TOB2Q14106 344 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 C8orf34Q49A92 452 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 HEATR3Q7Z4Q2 680 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 PCSK9Q8NBP7 692 aaKnown RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 KLHDC9Q8NEP7 349 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 SMARCC2Q8TAQ2 1214 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 SCFD2Q8WU76 684 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 LENG1Q96BZ8 264 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 ZNF274Q96GC6 653 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 WDR11Q9BZH6 1224 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 AP5M1Q9H0R1 490 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 ALDH8A1Q9H2A2 487 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 PDGFCQ9NRA1 345 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 PHF24Q9UPV7 400 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 GNEQ9Y223 722 aaKnown RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 NR2E3Q9Y5X4 410 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 DDX49Q9Y6V7 483 aaKnown RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 V9GY48 417 aaPredicted RBP14.39□□□□□ -0.11
SLIRP-209ENST00000557342 PDE4DIPQ5VU43 2346 aa14.39□□□□□ -0.11
SLIRP-209ENST00000557342 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 hCG_1642624A0A1W2PR95 340 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 MOXD2PA6NHM9 499 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 NKRFO15226 690 aaKnown RBP eCLIP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 ADCY6O43306 1168 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 EIF3JO75822 258 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 SEC24BO95487 1268 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 NR3C2P08235 984 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 C6orf222P0C671 652 aaPredicted RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 SMPD1P17405 629 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 EIF2AK2P19525 551 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 PDIA3P30101 505 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 ADD1P35611 737 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 NKX3-2P78367 333 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 AKAP17AQ02040 695 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 TTLL4Q14679 1199 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 ANKRD1Q15327 319 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 DUSP28Q4G0W2 176 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 PRPF38BQ5VTL8 546 aaKnown RBP14.38□□□□□ -0.11
SLIRP-209ENST00000557342 PPP1R18Q6NYC8 613 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 TLK2Q86UE8 772 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 FCHSD1Q86WN1 690 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 TEX2Q8IWB9 1127 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 PDCD2LQ9BRP1 358 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 PSTPIP2Q9H939 334 aa14.38□□□□□ -0.11
SLIRP-209ENST00000557342 TNRC18O15417 2968 aaPredicted RBP14.37□□□□□ -0.11
SLIRP-209ENST00000557342 ZEB2O60315 1214 aa14.37□□□□□ -0.11
SLIRP-209ENST00000557342 CCND2P30279 289 aa14.37□□□□□ -0.11
SLIRP-209ENST00000557342 PGM5Q15124 567 aa14.37□□□□□ -0.11
SLIRP-209ENST00000557342 GLT8D2Q9H1C3 349 aa14.37□□□□□ -0.11
SLIRP-209ENST00000557342 MEIS2O14770 477 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 DYNC1LI2O43237 492 aaPredicted RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 PRPF3O43395 683 aaKnown RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 STAM2O75886 525 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 MYCLP12524 364 aaPredicted RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 NAPAP54920 295 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 CCT2P78371 535 aaKnown RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 KCNA10Q16322 511 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 PFKFB3Q16875 520 aaPredicted RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 GNASQ5JWF2 1037 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 WWC2Q6AWC2 1192 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 CCSAPQ6IQ19 270 aaPredicted RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 KCNV1Q6PIU1 500 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 CPLX2Q6PUV4 134 aaKnown RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 SEPT14Q6ZU15 432 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 VSIG10LQ86VR7 867 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 GPKOWQ92917 476 aaPredicted RBP eCLIP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 RNF26Q9BY78 433 aaPredicted RBP14.36□□□□□ -0.11
SLIRP-209ENST00000557342 BARHL2Q9NY43 387 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 FRMPD4Q14CM0 1322 aa14.36□□□□□ -0.11
SLIRP-209ENST00000557342 A0A1W2PQ45 241 aaPredicted RBP14.35□□□□□ -0.11
SLIRP-209ENST00000557342 A0A1W2PQY0 241 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 MYADML2A6NDP7 307 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 CPLX1O14810 134 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 TXNP10599 105 aaKnown RBP14.35□□□□□ -0.11
SLIRP-209ENST00000557342 SCG2P13521 617 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 IFNAR1P17181 557 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 ACLYP53396 1101 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 NTRK3Q16288 839 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 FSCN1Q16658 493 aaKnown RBP14.35□□□□□ -0.11
SLIRP-209ENST00000557342 LRRC26Q2I0M4 334 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 BRDTQ58F21 947 aaPredicted RBP14.35□□□□□ -0.11
SLIRP-209ENST00000557342 USP17L6PQ6QN14 398 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 SLC39A5Q6ZMH5 540 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 TRIM22Q8IYM9 498 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 CCDC12Q8WUD4 166 aaPredicted RBP14.35□□□□□ -0.11
SLIRP-209ENST00000557342 GLT1D1Q96MS3 346 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 EHMT1Q9H9B1 1298 aa14.35□□□□□ -0.11
SLIRP-209ENST00000557342 SPDYE3A6NKU9 549 aa14.34□□□□□ -0.11
SLIRP-209ENST00000557342 STXBP3O00186 592 aa14.34□□□□□ -0.11
SLIRP-209ENST00000557342 CTAGE5O15320 804 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms