RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 COPS5Q92905 334 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 RILPL2Q969X0 211 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 ZKSCAN3Q9BRR0 538 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 RNF41Q9H4P4 317 aaPredicted RBP21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 THEGQ9P2T0 379 aa21.47■■□□□ 1.03
VIPAS39-209ENST00000556909 A6NJR5 290 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 GOLGA8HP0CJ92 632 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 TTLL4Q14679 1199 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 FAM47CQ5HY64 1035 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 NFRKBQ6P4R8 1299 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 PPP1R13LQ8WUF5 828 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 ATXN2LQ8WWM7 1075 aaKnown RBP21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 CPVLQ9H3G5 476 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 PCDHA11Q9Y5I1 949 aa21.46■■□□□ 1.03
VIPAS39-209ENST00000556909 ATP2A2P16615 1042 aaKnown RBP21.45■■□□□ 1.02
VIPAS39-209ENST00000556909 MFAP1P55081 439 aaKnown RBP21.45■■□□□ 1.02
VIPAS39-209ENST00000556909 CCDC85BQ15834 202 aaPredicted RBP21.45■■□□□ 1.02
VIPAS39-209ENST00000556909 DEFB128Q7Z7B8 93 aa21.45■■□□□ 1.02
VIPAS39-209ENST00000556909 KPNA6O60684 536 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 ARIH2O95376 493 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 TXNP10599 105 aaKnown RBP21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 SDSP20132 328 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 CDC37Q16543 378 aaPredicted RBP21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 DGKHQ86XP1 1220 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 RGS22Q8NE09 1264 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 UBA5Q9GZZ9 404 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 XIRP2A4UGR9 3374 aa21.44■■□□□ 1.02
VIPAS39-209ENST00000556909 B4DLN1 442 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 TNFRSF10AO00220 468 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 PITPNM1O00562 1244 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 RFC2P35250 354 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 MRPL12P52815 198 aaKnown RBP21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 PTPN11Q06124 597 aaPredicted RBP21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 SMC5Q8IY18 1101 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 PNMA1Q8ND90 353 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 ASB2Q96Q27 587 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 MYH7BA7E2Y1 1941 aa21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 PRRC2BQ5JSZ5 2229 aaKnown RBP21.43■■□□□ 1.02
VIPAS39-209ENST00000556909 ZNF213O14771 459 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 ABCB11O95342 1321 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 ACTN1P12814 892 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 NT5C2P49902 561 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 CCDC62Q6P9F0 684 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 IQCA1Q86XH1 822 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 BDP1A6H8Y1 2624 aa21.42■■□□□ 1.02
VIPAS39-209ENST00000556909 TCF20Q9UGU0 1960 aaKnown RBP21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 COL4A4P53420 1690 aaPredicted RBP21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 KDM4AO75164 1064 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 IQCF3P0C7M6 154 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 B4GALNT3Q6L9W6 998 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 TBC1D5Q92609 795 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 SLC9A7Q96T83 725 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 COL20A1Q9P218 1284 aa21.41■■□□□ 1.02
VIPAS39-209ENST00000556909 B4E1Z4 1266 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 CA3P07451 260 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 MMP3P08254 477 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 MRPS5P82675 430 aaKnown RBP21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 ASPRV1Q53RT3 343 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 CCDC178Q5BJE1 867 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 TMEM67Q5HYA8 995 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 CWC27Q6UX04 472 aaKnown RBP21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 PLEKHM2Q8IWE5 1019 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 ADGRF4Q8IZF3 695 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 RETREG2Q8NC44 543 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 SYTL5Q8TDW5 730 aaPredicted RBP21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 ADAMTS19Q8TE59 1207 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 AFG1LQ8WV93 481 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 ANKS1AQ92625 1134 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 MAF1Q9H063 256 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 OSBPL3Q9H4L5 887 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 KAT14Q9H8E8 782 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 NOD1Q9Y239 953 aa21.4■■□□□ 1.02
VIPAS39-209ENST00000556909 CHMP4BP1P59074 171 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 ARHGAP1Q07960 439 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 BFSP2Q13515 415 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 QRICH1Q2TAL8 776 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 SEPT14Q6ZU15 432 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 CHD1LQ86WJ1 897 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 MICALL1Q8N3F8 863 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 ENAHQ8N8S7 591 aaPredicted RBP21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 TAAR1Q96RJ0 339 aa21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 ZSCAN10Q96SZ4 725 aaPredicted RBP21.39■■□□□ 1.01
VIPAS39-209ENST00000556909 GH1P01241 217 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 AAMPQ13685 434 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 PTGISQ16647 500 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 LY6KQ17RY6 165 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 NSUN6Q8TEA1 469 aaKnown RBP21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 CTAGE1Q96RT6 745 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 DIAPH3Q9NSV4 1193 aa21.38■■□□□ 1.01
VIPAS39-209ENST00000556909 SESTD1Q86VW0 696 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 MCF2L2Q86YR7 1114 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 PHOSPHO2Q8TCD6 241 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 KAT2BQ92831 832 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 IWS1Q96ST2 819 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 RMDN3Q96TC7 470 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 FTOQ9C0B1 505 aaKnown RBP eCLIP21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 RWDD1Q9H446 243 aaPredicted RBP21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 ZSWIM5Q9P217 1185 aa21.37■■□□□ 1.01
VIPAS39-209ENST00000556909 RFXAPO00287 272 aa21.36■■□□□ 1.01
VIPAS39-209ENST00000556909 PARP1P09874 1014 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms