RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 ALX1Q15699 326 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 KRT40Q6A162 431 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 SLC30A10Q6XR72 485 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 DNERQ8NFT8 737 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 PPP1R13LQ8WUF5 828 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 HLA-CQ95604 372 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 TMEM47Q9BQJ4 181 aa14.91□□□□□ -0.02
SHMT2-223ENST00000556689 BAIAP3O94812 1187 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 EDNRBP24530 442 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 CHMP4BP1P59074 171 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 RRP12Q5JTH9 1297 aaKnown RBP14.9□□□□□ -0.02
SHMT2-223ENST00000556689 OTUD7AQ8TE49 926 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-223ENST00000556689 COPS5Q92905 334 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 EPHX3Q9H6B9 360 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 TCP11L1Q9NUJ3 509 aa14.9□□□□□ -0.02
SHMT2-223ENST00000556689 ARHGEF15O94989 841 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 PDHBP11177 359 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 MX1P20591 662 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 GRB10Q13322 594 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 PTGISQ16647 500 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 VPS53Q5VIR6 699 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 CCDC155Q8N6L0 562 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 GBF1Q92538 1859 aa14.89□□□□□ -0.03
SHMT2-223ENST00000556689 TCF20Q9UGU0 1960 aaKnown RBP14.88□□□□□ -0.03
SHMT2-223ENST00000556689 FGAP02671 866 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 KCNJ6P48051 423 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 RGS22Q8NE09 1264 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 CAGE1Q8TC20 777 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 TTC14Q96N46 770 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 LRFN3Q9BTN0 628 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 ZBED2Q9BTP6 218 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 HELLSQ9NRZ9 838 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 LMCD1Q9NZU5 365 aa14.88□□□□□ -0.03
SHMT2-223ENST00000556689 ARIH1Q9Y4X5 557 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-223ENST00000556689 PARNO95453 639 aaKnown RBP14.87□□□□□ -0.03
SHMT2-223ENST00000556689 ZNF543Q08ER8 600 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 TMEM31Q5JXX7 168 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 SESTD1Q86VW0 696 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 AFAP1L1Q8TED9 768 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 AFG1LQ8WV93 481 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 EVI5LQ96CN4 794 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 HCN4Q9Y3Q4 1203 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 WDR19Q8NEZ3 1342 aa14.87□□□□□ -0.03
SHMT2-223ENST00000556689 LRRC37A2A6NM11 1700 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 LPXNO60711 386 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 ARIH2O95376 493 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 CASTP20810 708 aaKnown RBP14.86□□□□□ -0.03
SHMT2-223ENST00000556689 WDR5P61964 334 aaKnown RBP14.86□□□□□ -0.03
SHMT2-223ENST00000556689 GPNMBQ14956 572 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 LY6KQ17RY6 165 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 GDF6Q6KF10 455 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-223ENST00000556689 CCDC62Q6P9F0 684 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 ZBTB47Q9UFB7 747 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-223ENST00000556689 PCDHB15Q9Y5E8 787 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 TRANK1O15050 2925 aa14.86□□□□□ -0.03
SHMT2-223ENST00000556689 PRRC2BQ5JSZ5 2229 aaKnown RBP14.86□□□□□ -0.03
SHMT2-223ENST00000556689 LCHNA4D1U4 455 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 GH1P01241 217 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 SNHG28P0DPA3 235 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 SELPP16109 830 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 HOXD11P31277 338 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-223ENST00000556689 USH1GQ495M9 461 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 MCMDC2Q4G0Z9 681 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 CNKSR3Q6P9H4 555 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 SEPT14Q6ZU15 432 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 LRRC8DQ7L1W4 858 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 SPRED2Q7Z698 418 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 CTAGE1Q96RT6 745 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 RAD9AQ99638 391 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 MAF1Q9H063 256 aa14.85□□□□□ -0.03
SHMT2-223ENST00000556689 NCOR1O75376 2440 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 ABHD14A-ACY1A0A1B0GW23 586 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 GPR37L1O60883 481 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 MMP3P08254 477 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 HSPD1P10809 573 aaKnown RBP14.84□□□□□ -0.03
SHMT2-223ENST00000556689 PCP11498 1178 aaKnown RBP14.84□□□□□ -0.03
SHMT2-223ENST00000556689 CKBP12277 381 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 STXBP2Q15833 593 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 GPATCH4Q5T3I0 446 aaKnown RBP14.84□□□□□ -0.03
SHMT2-223ENST00000556689 MFSD6Q6ZSS7 791 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 CHST3Q7LGC8 479 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 TMCO2Q7Z6W1 182 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-223ENST00000556689 NSUN6Q8TEA1 469 aaKnown RBP14.84□□□□□ -0.03
SHMT2-223ENST00000556689 KAT2BQ92831 832 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 IWS1Q96ST2 819 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 UBA5Q9GZZ9 404 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 SUGCTQ9HAC7 445 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 SCN10AQ9Y5Y9 1956 aa14.84□□□□□ -0.03
SHMT2-223ENST00000556689 SCN5AQ14524 2016 aa14.83□□□□□ -0.03
SHMT2-223ENST00000556689 BDP1A6H8Y1 2624 aa14.83□□□□□ -0.03
SHMT2-223ENST00000556689 NBNO60934 754 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 EFCAB14O75071 495 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 GJB5O95377 273 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 CXCL10P02778 98 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 GOLGA8HP0CJ92 632 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 HAND2P61296 217 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 ERVK-21P61565 698 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 DEFB103AP81534 67 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 ARHGAP1Q07960 439 aa14.83□□□□□ -0.04
SHMT2-223ENST00000556689 RBL2Q08999 1139 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms