RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 SRSF11Q05519 484 aaKnown RBP6.92□□□□□ -1.3
TDP1-215ENST00000556498 PPIDQ08752 370 aaKnown RBP6.92□□□□□ -1.3
TDP1-215ENST00000556498 COG2Q14746 738 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 PCSK7Q16549 785 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 SPATA1Q5VX52 437 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 CWF19L1Q69YN2 538 aaKnown RBP6.92□□□□□ -1.3
TDP1-215ENST00000556498 SLC30A9Q6PML9 568 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 RUFY3Q7L099 469 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 MCM10Q7L590 875 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 TMC4Q7Z404 712 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 IQCA1Q86XH1 822 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 ITPRIPQ8IWB1 547 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 MAB21L3Q8N8X9 362 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 CCDC110Q8TBZ0 833 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 MAGEC3Q8TD91 643 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 NUP133Q8WUM0 1156 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 JDP2Q8WYK2 163 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 CUL5Q93034 780 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 TNFRSF25Q93038 417 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 RELTQ969Z4 430 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 RBM41Q96IZ5 413 aaKnown RBP6.92□□□□□ -1.3
TDP1-215ENST00000556498 FRMD6Q96NE9 622 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 HAUS7Q99871 368 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 IGFLR1Q9H665 355 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 PCDH18Q9HCL0 1135 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 DNAJB12Q9NXW2 375 aaKnown RBP6.92□□□□□ -1.3
TDP1-215ENST00000556498 ZNF69Q9UC07 566 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 STK39Q9UEW8 545 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 MTUS1Q9ULD2 1270 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 SATB2Q9UPW6 733 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 PRKAB1Q9Y478 270 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 CCDC171Q6TFL3 1326 aa6.92□□□□□ -1.3
TDP1-215ENST00000556498 A0A0B4J203 849 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 ADARB2-AS1A8MUL3 147 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 STXBP3O00186 592 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 TBX3O15119 743 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 ORC4O43929 436 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 TCEA3O75764 348 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 BCRP11274 1271 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 GNAT2P19087 354 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 VAMP1P23763 118 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 GPTP24298 496 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 GNA15P30679 374 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 UBASH3AP57075 661 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 ITIH3Q06033 890 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 NCBP1Q09161 790 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 DDX10Q13206 875 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 NMIQ13287 307 aaPredicted RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 SF3B3Q15393 1217 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 LRRFIP1Q32MZ4 808 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 WLSQ5T9L3 541 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 PEAR1Q5VY43 1037 aaPredicted RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 CDCA2Q69YH5 1023 aaPredicted RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 KANK3Q6NY19 840 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 FIP1L1Q6UN15 594 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 PI16Q6UXB8 463 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 LRRC31Q6UY01 552 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 HDGFL2Q7Z4V5 671 aaPredicted RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 CARNMT1Q8N4J0 409 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 PRPF38AQ8NAV1 312 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 TNIP2Q8NFZ5 429 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 PPP1R14CQ8TAE6 165 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 CTNNBL1Q8WYA6 563 aaPredicted RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 NSUN5Q96P11 429 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 MDFIQ99750 246 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 KIF9Q9HAQ2 790 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 TMEM165Q9HC07 324 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 NPHS2Q9NP85 383 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 PCDH12Q9NPG4 1184 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 NLRP2Q9NX02 1062 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 DDX56Q9NY93 547 aaKnown RBP6.91□□□□□ -1.3
TDP1-215ENST00000556498 CEP131Q9UPN4 1083 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 ZNF148Q9UQR1 794 aa6.91□□□□□ -1.3
TDP1-215ENST00000556498 CCDC162PA2VCL2 907 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 LRRC10BA6NIK2 292 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 ENO4A6NNW6 628 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 NEURL1BA8MQ27 555 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 TTC34A8MYJ7 566 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 HNRNPCL2B2RXH8 293 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 GIPC1O14908 333 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 MUSKO15146 869 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 SPTLC2O15270 562 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 HNRNPCL1O60812 293 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 YEATS4O95619 227 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 ATF7P17544 494 aaPredicted RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 KCNA6P17658 529 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 OAS2P29728 719 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 ATP5DP30049 168 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 HNRNPH1P31943 449 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 PEX5P50542 639 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 PHEXP78562 749 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 BASP1P80723 227 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 MRPL58Q14197 206 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 BRD3Q15059 726 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 TRIM71Q2Q1W2 868 aaKnown RBP6.9□□□□□ -1.3
TDP1-215ENST00000556498 C10orf76Q5T2E6 689 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 KIAA0319Q5VV43 1072 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 CREB3L3Q68CJ9 461 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 ADALQ6DHV7 355 aa6.9□□□□□ -1.3
TDP1-215ENST00000556498 CAPRIN2Q6IMN6 1127 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms