RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 ZFYP08048 801 aaPredicted RBP16.48■□□□□ 0.23
ACTN1-219ENST00000556432 MRE11P49959 708 aa16.48■□□□□ 0.23
ACTN1-219ENST00000556432 PTPN11Q06124 597 aaPredicted RBP16.48■□□□□ 0.23
ACTN1-219ENST00000556432 LRRFIP1Q32MZ4 808 aaKnown RBP16.48■□□□□ 0.23
ACTN1-219ENST00000556432 IFNL3Q8IZI9 196 aa16.48■□□□□ 0.23
ACTN1-219ENST00000556432 SCFD2Q8WU76 684 aa16.48■□□□□ 0.23
ACTN1-219ENST00000556432 TGS1Q96RS0 853 aaKnown RBP16.48■□□□□ 0.23
ACTN1-219ENST00000556432 DDX19BQ9UMR2 479 aa16.48■□□□□ 0.23
ACTN1-219ENST00000556432 TET1Q8NFU7 2136 aa16.48■□□□□ 0.23
ACTN1-219ENST00000556432 SCN10AQ9Y5Y9 1956 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 LCTP09848 1927 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 ALADP13716 330 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 SLC16A2P36021 539 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 DEFB103AP81534 67 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 HNRNPUQ00839 825 aaKnown RBP eCLIP16.47■□□□□ 0.23
ACTN1-219ENST00000556432 PPARAQ07869 468 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 LEXMQ3ZCV2 418 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 TSHZ3Q63HK5 1081 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 FAM117BQ6P1L5 589 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 SLC30A10Q6XR72 485 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 FAM178BQ8IXR5 827 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 CAGE1Q8TC20 777 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 AFAP1L1Q8TED9 768 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 COPS5Q92905 334 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 ZBTB40Q9NUA8 1239 aa16.47■□□□□ 0.23
ACTN1-219ENST00000556432 LOC102724159A0A0B4J2E5 919 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 RBM47A0AV96 593 aaKnown RBP16.46■□□□□ 0.23
ACTN1-219ENST00000556432 A6NJR5 290 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 NMT2O60551 498 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 TXNP10599 105 aaKnown RBP16.46■□□□□ 0.23
ACTN1-219ENST00000556432 SELPP16109 830 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 PWP2Q15269 919 aaKnown RBP16.46■□□□□ 0.23
ACTN1-219ENST00000556432 PTCRAQ6ISU1 281 aaPredicted RBP16.46■□□□□ 0.23
ACTN1-219ENST00000556432 CNKSR3Q6P9H4 555 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 LRRC8DQ7L1W4 858 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 RAD9AQ99638 391 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 SUGCTQ9HAC7 445 aa16.46■□□□□ 0.23
ACTN1-219ENST00000556432 IL9P15248 144 aa16.45■□□□□ 0.22
ACTN1-219ENST00000556432 ERVK-21P61565 698 aa16.45■□□□□ 0.22
ACTN1-219ENST00000556432 SYDE2Q5VT97 1194 aa16.45■□□□□ 0.22
ACTN1-219ENST00000556432 RNF207Q6ZRF8 634 aa16.45■□□□□ 0.22
ACTN1-219ENST00000556432 DCAF4Q8WV16 495 aa16.45■□□□□ 0.22
ACTN1-219ENST00000556432 RANBP17Q9H2T7 1088 aaKnown RBP16.45■□□□□ 0.22
ACTN1-219ENST00000556432 LINC01553A4QN01 128 aa16.44■□□□□ 0.22
ACTN1-219ENST00000556432 RANBP6O60518 1105 aaKnown RBP16.44■□□□□ 0.22
ACTN1-219ENST00000556432 GJB5O95377 273 aa16.44■□□□□ 0.22
ACTN1-219ENST00000556432 TTBK2Q6IQ55 1244 aa16.44■□□□□ 0.22
ACTN1-219ENST00000556432 GDF6Q6KF10 455 aaPredicted RBP16.44■□□□□ 0.22
ACTN1-219ENST00000556432 EP400NLQ6ZTU2 488 aa16.44■□□□□ 0.22
ACTN1-219ENST00000556432 FBXO22Q8NEZ5 403 aa16.44■□□□□ 0.22
ACTN1-219ENST00000556432 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.44■□□□□ 0.22
ACTN1-219ENST00000556432 CHMP4BQ9H444 224 aaKnown RBP16.44■□□□□ 0.22
ACTN1-219ENST00000556432 FRMPD2Q68DX3 1309 aaPredicted RBP16.44■□□□□ 0.22
ACTN1-219ENST00000556432 PTPRSQ13332 1948 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.43■□□□□ 0.22
ACTN1-219ENST00000556432 B4DLN1 442 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 PARNO95453 639 aaKnown RBP16.43■□□□□ 0.22
ACTN1-219ENST00000556432 MRPL12P52815 198 aaKnown RBP16.43■□□□□ 0.22
ACTN1-219ENST00000556432 CTDSPL2Q05D32 466 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 AFG1LQ8WV93 481 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 SEC62Q99442 399 aaKnown RBP16.43■□□□□ 0.22
ACTN1-219ENST00000556432 GPCPD1Q9NPB8 672 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 IL17RBQ9NRM6 502 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 TOMM22Q9NS69 142 aa16.43■□□□□ 0.22
ACTN1-219ENST00000556432 TRIP12Q14669 1992 aaPredicted RBP16.43■□□□□ 0.22
ACTN1-219ENST00000556432 ABHD14A-ACY1A0A1B0GW23 586 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 H3BQ06 376 aaPredicted RBP16.42■□□□□ 0.22
ACTN1-219ENST00000556432 DCXO43602 365 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 EFCAB14O75071 495 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 RPS6P62753 249 aaKnown RBP16.42■□□□□ 0.22
ACTN1-219ENST00000556432 NHLH1Q02575 133 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 IKBKEQ14164 716 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 CHST3Q7LGC8 479 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 INCENPQ9NQS7 918 aa16.42■□□□□ 0.22
ACTN1-219ENST00000556432 GRXCR2A6NFK2 248 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 NBNO60934 754 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 ARIH2O95376 493 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 CKBP12277 381 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 PTPROQ16827 1216 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 PUS10Q3MIT2 529 aaKnown RBP16.41■□□□□ 0.22
ACTN1-219ENST00000556432 C7orf31Q8N865 590 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 DNERQ8NFT8 737 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 CLEC4DQ8WXI8 215 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 DHX38Q92620 1227 aaKnown RBP16.41■□□□□ 0.22
ACTN1-219ENST00000556432 FBXL18Q96ME1 805 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 C17orf80Q9BSJ5 609 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 FSD1Q9BTV5 496 aa16.41■□□□□ 0.22
ACTN1-219ENST00000556432 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.41■□□□□ 0.22
ACTN1-219ENST00000556432 GH1P01241 217 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 CXCL10P02778 98 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 MMP3P08254 477 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 EDNRBP24530 442 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 GPNMBQ14956 572 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 BTNL9Q6UXG8 535 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 SEPT14Q6ZU15 432 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 CTAGE1Q96RT6 745 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 CTNNA3Q9UI47 895 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 PNMA2Q9UL42 364 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 FAM50BQ9Y247 325 aa16.4■□□□□ 0.22
ACTN1-219ENST00000556432 INSL6Q9Y581 213 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms