RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TSC22D4Q9Y3Q8 395 aa6.27□□□□□ -1.41
SCFD1-218ENST00000556256 CYR61O00622 381 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 CBFA2T2O43439 604 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 IMPDH2P12268 514 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 WWC2Q6AWC2 1192 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 KYQ8NBH2 561 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 TXNDC5Q8NBS9 432 aaKnown RBP6.26□□□□□ -1.41
SCFD1-218ENST00000556256 SPON2Q9BUD6 331 aa6.26□□□□□ -1.41
SCFD1-218ENST00000556256 STXBP3O00186 592 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 VAMP4O75379 141 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 NTRK1P04629 796 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 C9orf131Q5VYM1 1079 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 RUFY4Q6ZNE9 571 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 STK32CQ86UX6 486 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 KIAA0825Q8IV33 1275 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 FAM26EQ8N5C1 309 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 ADCY4Q8NFM4 1077 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 PCDH18Q9HCL0 1135 aa6.25□□□□□ -1.41
SCFD1-218ENST00000556256 DDX3XO00571 662 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCFD1-218ENST00000556256 GUCY2CP25092 1073 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 SEPHS1P49903 392 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 ICAM4Q14773 271 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 DPY19L1Q2PZI1 675 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 FERD3LQ96RJ6 166 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 ZNF747Q9BV97 191 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCFD1-218ENST00000556256 PPP4R1LQ9P1A2 415 aa6.24□□□□□ -1.41
SCFD1-218ENST00000556256 C2orf71A6NGG8 1288 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 FZD7O75084 574 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 FUCA1P04066 466 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 PRR31Q5SQ13 230 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 CD300LDQ6UXZ3 194 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 ETV3LQ6ZN32 361 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 TTLL6Q8N841 843 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 RNF34Q969K3 372 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 KLC2Q9H0B6 622 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 SLITRK6Q9H5Y7 841 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 WHRNQ9P202 907 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 LTBP3Q9NS15 1303 aa6.23□□□□□ -1.41
SCFD1-218ENST00000556256 NPHP3-ACAD11A0A0J9YXS1 232 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 C7orf72A4D263 438 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 B4GALT3O60512 393 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 AMHP03971 560 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 PAMP19021 973 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 ERICH6Q7L0X2 663 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 RBBP8NLQ8NC74 664 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-218ENST00000556256 PLEKHO2Q8TD55 490 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 LCORQ96JN0 433 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-218ENST00000556256 HAUS7Q99871 368 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 CD248Q9HCU0 757 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 BACE2Q9Y5Z0 518 aa6.22□□□□□ -1.41
SCFD1-218ENST00000556256 LAMTOR5O43504 91 aa6.21□□□□□ -1.42
SCFD1-218ENST00000556256 ITGA1P56199 1179 aa6.21□□□□□ -1.42
SCFD1-218ENST00000556256 SURF1Q15526 300 aa6.21□□□□□ -1.42
SCFD1-218ENST00000556256 FBXW10Q5XX13 1052 aa6.21□□□□□ -1.42
SCFD1-218ENST00000556256 KLHL25Q9H0H3 589 aa6.21□□□□□ -1.42
SCFD1-218ENST00000556256 NPHS1O60500 1241 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 MRPL58Q14197 206 aaKnown RBP6.2□□□□□ -1.42
SCFD1-218ENST00000556256 USP51Q70EK9 711 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 ADAT2Q7Z6V5 191 aaKnown RBP6.2□□□□□ -1.42
SCFD1-218ENST00000556256 MIB1Q86YT6 1006 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 DPF3Q92784 378 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 CDK5RAP1Q96SZ6 601 aaKnown RBP6.2□□□□□ -1.42
SCFD1-218ENST00000556256 VPS11Q9H270 941 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 PPT2Q9UMR5 302 aa6.2□□□□□ -1.42
SCFD1-218ENST00000556256 NPEPPSL1A6NEC2 478 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 SGSM2O43147 1006 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 AMPD2Q01433 879 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 GNPTABQ3T906 1256 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 HEATR6Q6AI08 1181 aaKnown RBP6.19□□□□□ -1.42
SCFD1-218ENST00000556256 DCP2Q8IU60 420 aaKnown RBP6.19□□□□□ -1.42
SCFD1-218ENST00000556256 ARHGEF39Q8N4T4 335 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 DNERQ8NFT8 737 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 PCED1AQ9H1Q7 454 aa6.19□□□□□ -1.42
SCFD1-218ENST00000556256 CGGBP1Q9UFW8 167 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-218ENST00000556256 TRBV23OR9-2A0A075B6M9 112 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 C9orf118A6NHY6 69 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 GPR42O15529 346 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 PPM1BO75688 479 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 CRB2Q5IJ48 1285 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 MBLAC2Q68D91 279 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 ZC3H18Q86VM9 953 aaKnown RBP6.18□□□□□ -1.42
SCFD1-218ENST00000556256 FGD4Q96M96 766 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 AP5M1Q9H0R1 490 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 GBP3Q9H0R5 595 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 HS3ST3A1Q9Y663 406 aa6.18□□□□□ -1.42
SCFD1-218ENST00000556256 EPHX1P07099 455 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 ERCC3P19447 782 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 ZNF585AQ6P3V2 769 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 PALM2Q8IXS6 379 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 MBD6Q96DN6 1003 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 DEF6Q9H4E7 631 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 MARCH2Q9P0N8 246 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 PCDHB10Q9UN67 800 aa6.17□□□□□ -1.42
SCFD1-218ENST00000556256 ZNF28P17035 718 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 STAT5AP42229 794 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 GRB10Q13322 594 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 ADAM9Q13443 819 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 PRAMEF18Q5VWM3 479 aa6.16□□□□□ -1.42
SCFD1-218ENST00000556256 PLEKHH3Q7Z736 793 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms