RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 NLRP4Q96MN2 994 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 ABCA9Q8IUA7 1624 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 GTPBP6O43824 516 aaPredicted RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 TBC1D8O95759 1140 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 RPN1P04843 607 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 APOA5Q6Q788 366 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 ZNF589Q86UQ0 364 aaPredicted RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 DNAJC5Q9H3Z4 198 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 AMFRQ9UKV5 643 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 HOXD10P28358 340 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 NSFP46459 744 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 LARP4BQ92615 738 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 EEF2KMTQ96G04 330 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 RAVER2Q9HCJ3 691 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 ZSWIM6Q9HCJ5 1215 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 OVOS2A0A0G2JMS6 1433 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 OVOS2A0A0J9YW53 1432 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 OVOS2Q6IE36 1432 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 AGLP35573 1532 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 A0A0G2JLW4 131 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 VIMP08670 466 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 PTPN12Q05209 780 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 APOBEC3FQ8IUX4 373 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 CELF1Q92879 486 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 METTL14Q9HCE5 456 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 VPS18Q9P253 973 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 A6NJR5 290 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 SCRN1Q12765 414 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 RC3H1Q5TC82 1133 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 ELMSAN1Q6PJG2 1045 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 SPATA24Q86W54 205 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 GCNAQ96QF7 691 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 NXF1Q9UBU9 619 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 INPP5FQ9Y2H2 1132 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 PREX2Q70Z35 1606 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 LGSNQ5TDP6 509 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SNRNP48Q6IEG0 339 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SMIM5Q71RC9 77 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 PODNQ7Z5L7 613 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 TTC30AQ86WT1 665 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 MAIP1Q8WWC4 291 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 NT5C1BQ96P26 610 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ACCSQ96QU6 501 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CACYBPQ9HB71 228 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 USP17L5A8MUK1 530 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 COBLO75128 1261 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 RNF8O76064 485 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ANXA13P27216 316 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 EVCP57679 992 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 LRRC41Q15345 812 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CCDC121Q6ZUS5 278 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 PARD3BQ8TEW8 1205 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CACTINQ8WUQ7 758 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 PRPF31Q8WWY3 499 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 OSBP2Q969R2 916 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 RNF26Q9BY78 433 aaPredicted RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SNAP23O00161 211 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 KRT15P19012 456 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CATSPER4Q7RTX7 472 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 KRT222Q8N1A0 295 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CD209Q9NNX6 404 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 HOXC10Q9NYD6 342 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CLIC4Q9Y696 253 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 TNS3Q68CZ2 1445 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 THAP12O43422 761 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SLC4A1P02730 911 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 CYP21A2P08686 494 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 PRDX5P30044 214 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 VPS41P49754 854 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ZNF75DP51815 510 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 TUBB4BP68371 445 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 FYB2Q5VWT5 728 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SLC17A8Q8NDX2 589 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 GANCQ8TET4 914 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 MINPP1Q9UNW1 487 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ZWINTO95229 277 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ADKP55263 362 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 SARNPP82979 210 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 PTK2Q05397 1052 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 DSTYKQ6XUX3 929 aa8.99□□□□□ -0.97
SYNE2-220ENST00000555612 INTS8Q75QN2 995 aaKnown RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.99□□□□□ -0.97
SYNE2-220ENST00000555612 BNIP3LO60238 219 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 CYP2D6P10635 497 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 SPP2Q13103 211 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 KAZNQ674X7 775 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 GCFC2P16383 781 aaKnown RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 MFAP3P55082 362 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 HHATQ5VTY9 493 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 CCDC68Q9H2F9 335 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 PRDM5Q9NQX1 630 aaPredicted RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 CDC42BPGQ6DT37 1551 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 hCG_1984214I3L0E3 225 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 CLIC2O15247 247 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 GPSM2P81274 684 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 KRBA2Q6ZNG9 492 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 IFT20Q8IY31 132 aa8.98□□□□□ -0.97
SYNE2-220ENST00000555612 ZNF713Q8N859 430 aaPredicted RBP8.98□□□□□ -0.97
SYNE2-220ENST00000555612 HAUS1Q96CS2 278 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms