RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 REXO1Q8N1G1 1221 aaKnown RBP10.56□□□□□ -0.72
SYNE2-213ENST00000554805 LRRC15Q8TF66 581 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 TSG101Q99816 390 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 NYXQ9GZU5 481 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 NDST4Q9H3R1 872 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 GOLGA6AQ9NYA3 693 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 MKRN1Q9UHC7 482 aaKnown RBP10.56□□□□□ -0.72
SYNE2-213ENST00000554805 FRMPD2Q68DX3 1309 aaPredicted RBP10.56□□□□□ -0.72
SYNE2-213ENST00000554805 DUOX1Q9NRD9 1551 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 MYBL2P10244 700 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 RNASE9P60153 205 aaKnown RBP10.56□□□□□ -0.72
SYNE2-213ENST00000554805 MEA1Q16626 185 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 SLC35G1Q2M3R5 365 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 VWA3BQ502W6 1294 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 NFRKBQ6P4R8 1299 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 LRRC31Q6UY01 552 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 POTEDQ86YR6 584 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 WDR66Q8TBY9 1149 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.56□□□□□ -0.72
SYNE2-213ENST00000554805 MAGEF1Q9HAY2 307 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 EHD2Q9NZN4 543 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 TBC1D7Q9P0N9 293 aa10.56□□□□□ -0.72
SYNE2-213ENST00000554805 SPATA31A1Q5TZJ5 1347 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 ANO9A1A5B4 782 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 PPP1R2P41236 205 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 RASSF7Q02833 373 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 LINC00116Q8NCU8 138 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 SNX29Q8TEQ0 813 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 C7orf25Q9BPX7 421 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 LZTS2Q9BRK4 669 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 LRRC1Q9BTT6 524 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 CDCA7Q9BWT1 371 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-213ENST00000554805 JRKLQ9Y4A0 524 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 CAPN6Q9Y6Q1 641 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 NKRFO15226 690 aaKnown RBP eCLIP10.55□□□□□ -0.72
SYNE2-213ENST00000554805 PRPHP41219 470 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 KRT79Q5XKE5 535 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 TTC19Q6DKK2 380 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-213ENST00000554805 COA7Q96BR5 231 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 SEMA6BQ9H3T3 888 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 VIPAS39Q9H9C1 493 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 GPCPD1Q9NPB8 672 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 SNX12Q9UMY4 172 aa10.55□□□□□ -0.72
SYNE2-213ENST00000554805 TARSL2A2RTX5 802 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 RASSF10A6NK89 507 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 LRRC53A6NM62 1247 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 TRAF5O00463 557 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 GNPATO15228 680 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 SYF2O95926 243 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 EPS15P42566 896 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 RAB34Q9BZG1 259 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 HYOU1Q9Y4L1 999 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 MYMKA6NI61 221 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 EPHB6O15197 1021 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 RASA1P20936 1047 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 CDK8P49336 464 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 CCDC84Q86UT8 332 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 FNBP4Q8N3X1 1017 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 KIAA0895Q8NCT3 520 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 CERKQ8TCT0 537 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 HDAC7Q8WUI4 952 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 IFT81Q8WYA0 676 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 DMGDHQ9UI17 866 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 PALM3A6NDB9 673 aaPredicted RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 POTEMA6NI47 508 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 KRT18P05783 430 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 BTDP43251 543 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 GRIK5Q16478 980 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 MAN2A1Q16706 1144 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 MIIPQ5JXC2 388 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 NELFCDQ8IXH7 590 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 MSL3Q8N5Y2 521 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 CCDC155Q8N6L0 562 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 DAGLBQ8NCG7 672 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 LARP4BQ92615 738 aaKnown RBP10.54□□□□□ -0.72
SYNE2-213ENST00000554805 ERGIC2Q96RQ1 377 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 ARHGAP20Q9P2F6 1191 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 FAM184BQ9ULE4 1060 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 AFF2P51816 1311 aa10.54□□□□□ -0.72
SYNE2-213ENST00000554805 ZNF263O14978 683 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 HSF2BPO75031 334 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 C8orf74Q6P047 294 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 SLC51AQ86UW1 340 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 SPATA4Q8NEY3 305 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 OSBPL9Q96SU4 736 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 TTYH3Q9C0H2 523 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 ZMYND12Q9H0C1 365 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 QTRT2Q9H974 415 aaKnown RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 BMP2KQ9NSY1 1161 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 CICQ96RK0 1608 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 USP17L5A8MUK1 530 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 TDP2O95551 362 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 TCP1P17987 556 aaKnown RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 GFPT1Q06210 699 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 PICALMQ13492 652 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 TMED8Q6PL24 325 aaPredicted RBP10.53□□□□□ -0.72
SYNE2-213ENST00000554805 TMC4Q7Z404 712 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 NOX5Q96PH1 765 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 SH2D4AQ9H788 454 aa10.53□□□□□ -0.72
SYNE2-213ENST00000554805 DISP2A7MBM2 1401 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms