RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 KLHDC9Q8NEP7 349 aa12.34□□□□□ -0.43
SHMT2-213ENST00000554600 GLT1D1Q96MS3 346 aa12.34□□□□□ -0.43
SHMT2-213ENST00000554600 SPZ1Q9BXG8 430 aa12.34□□□□□ -0.43
SHMT2-213ENST00000554600 COL20A1Q9P218 1284 aa12.34□□□□□ -0.43
SHMT2-213ENST00000554600 GCOM1H8Y6P7 765 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 ZEB2O60315 1214 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 PQBP1O60828 265 aaKnown RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 POLR2MP0CAP2 368 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 MYCLP12524 364 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 CPA1P15085 419 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 CST5P28325 142 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 HSPA4P34932 840 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 MAGEA10P43363 369 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 MDM2Q00987 491 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 EXOSC10Q01780 885 aaKnown RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 TLE2Q04725 743 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 FSCN1Q16658 493 aaKnown RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 TSGA10IPQ3SY00 556 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 DUSP28Q4G0W2 176 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 TMEM63BQ5T3F8 832 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 BLOC1S2Q6QNY1 142 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 SEPT14Q6ZU15 432 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 SGMS1Q86VZ5 419 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 FCHSD1Q86WN1 690 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 FANCBQ8NB91 859 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 SCFD2Q8WU76 684 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 LBHD1Q9BQE6 289 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 MAF1Q9H063 256 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 RBM27Q9P2N5 1060 aaKnown RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 GNEQ9Y223 722 aaKnown RBP12.33□□□□□ -0.44
SHMT2-213ENST00000554600 SNX14Q9Y5W7 946 aa12.33□□□□□ -0.44
SHMT2-213ENST00000554600 RANBP2P49792 3224 aaKnown RBP12.32□□□□□ -0.44
SHMT2-213ENST00000554600 KLF18A0A0U1RQI7 1052 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 hCG_1642624A0A1W2PR95 340 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 GOLGA8AA7E2F4 631 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 GOLGA8BA8MQT2 603 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 OPLAHO14841 1288 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 ZBTB43O43298 467 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 TXNP10599 105 aaKnown RBP12.32□□□□□ -0.44
SHMT2-213ENST00000554600 EDNRBP24530 442 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 PSMA5P28066 241 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 HSD17B4P51659 736 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 TTLL4Q14679 1199 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 STXBP2Q15833 593 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 RTN1Q16799 776 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 APOA5Q6Q788 366 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 CXCL17Q6UXB2 119 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 SRBD1Q8N5C6 995 aaKnown RBP12.32□□□□□ -0.44
SHMT2-213ENST00000554600 OR6J1Q8NGC5 347 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 CUL5Q93034 780 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 IWS1Q96ST2 819 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 PXMP2Q9NR77 195 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 SCN10AQ9Y5Y9 1956 aa12.32□□□□□ -0.44
SHMT2-213ENST00000554600 A0A0U1RQG5 324 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 DCDC2CA8MYV0 355 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 NR3C2P08235 984 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 MYL3P08590 195 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 CASTP20810 708 aaKnown RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 SMARCA1P28370 1054 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 SNX17Q15036 470 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 BRDTQ58F21 947 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 CCSAPQ6IQ19 270 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 Q6ZUG5 572 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 TMTC3Q6ZXV5 915 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 SMARCC2Q8TAQ2 1214 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 COPS5Q92905 334 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 UBE2OQ9C0C9 1292 aaKnown RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 RBM28Q9NW13 759 aaKnown RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 MAP3K20Q9NYL2 800 aaKnown RBP12.31□□□□□ -0.44
SHMT2-213ENST00000554600 BRPF3Q9ULD4 1205 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 Q9Y3F1 56 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 COL6A3P12111 3177 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 ELP1O95163 1332 aa12.31□□□□□ -0.44
SHMT2-213ENST00000554600 MYO9BQ13459 2157 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 RBM47A0AV96 593 aaKnown RBP12.3□□□□□ -0.44
SHMT2-213ENST00000554600 NKRFO15226 690 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-213ENST00000554600 CTAGE5O15320 804 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 CLTBP09497 229 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 CPT1AP50416 773 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 APOBRQ0VD83 1088 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 HEATR3Q7Z4Q2 680 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 SAMD3Q8N6K7 520 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 KCNB2Q92953 911 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 BRF1Q92994 677 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 ZFP91Q96JP5 570 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-213ENST00000554600 GDF15Q99988 308 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 PDLIM7Q9NR12 457 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 TMEM39AQ9NV64 488 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 MROH7Q68CQ1 1323 aa12.3□□□□□ -0.44
SHMT2-213ENST00000554600 ARVCFO00192 962 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 TLR3O15455 904 aaKnown RBP12.29□□□□□ -0.44
SHMT2-213ENST00000554600 CABYRO75952 493 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 RAG1P15918 1043 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 RPS6KB1P23443 525 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 CCND2P30279 289 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 CHMP4BP1P59074 171 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 C1orf53Q5VUE5 145 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 USP17L6PQ6QN14 398 aa12.29□□□□□ -0.44
SHMT2-213ENST00000554600 SH3RF1Q7Z6J0 888 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms