RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 MAP2K1Q02750 393 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-210ENST00000553950 BAATQ14032 418 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-210ENST00000553950 INF2Q27J81 1249 aa16.51■□□□□ 0.23
SHMT2-210ENST00000553950 FCHSD1Q86WN1 690 aa16.51■□□□□ 0.23
SHMT2-210ENST00000553950 KCNG4Q8TDN1 519 aa16.51■□□□□ 0.23
SHMT2-210ENST00000553950 NSUN6Q8TEA1 469 aaKnown RBP16.51■□□□□ 0.23
SHMT2-210ENST00000553950 SOCS4Q8WXH5 440 aa16.51■□□□□ 0.23
SHMT2-210ENST00000553950 TMEM260Q9NX78 707 aa16.51■□□□□ 0.23
SHMT2-210ENST00000553950 NASPP49321 788 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-210ENST00000553950 ARHGAP4P98171 946 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 SETQ01105 290 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-210ENST00000553950 DNM1Q05193 864 aaKnown RBP16.5■□□□□ 0.23
SHMT2-210ENST00000553950 KIF22Q14807 665 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 NOM1Q5C9Z4 860 aaKnown RBP16.5■□□□□ 0.23
SHMT2-210ENST00000553950 PPP4R3AQ6IN85 833 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 GPR142Q7Z601 462 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 PLEKHH3Q7Z736 793 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 IWS1Q96ST2 819 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 ZIC5Q96T25 663 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 RMDN3Q96TC7 470 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 BEGAINQ9BUH8 593 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 PORCNQ9H237 461 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 RTEL1Q9NZ71 1219 aa16.5■□□□□ 0.23
SHMT2-210ENST00000553950 ELP1O95163 1332 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 SLC15A5A6NIM6 579 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 DDX11L8A8MPP1 907 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 BAG4O95429 457 aaKnown RBP16.49■□□□□ 0.23
SHMT2-210ENST00000553950 CYP3A4P08684 503 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 CCND2P30279 289 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 FCGRTP55899 365 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 GRB14Q14449 540 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 STK38Q15208 465 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 LETM2Q2VYF4 491 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 Q3C1V9 767 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 ARHGEF16Q5VV41 709 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 ANO1Q5XXA6 986 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 PCNX4Q63HM2 1172 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 EFCC1Q9HA90 598 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 PXMP2Q9NR77 195 aa16.49■□□□□ 0.23
SHMT2-210ENST00000553950 NEMFO60524 1076 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 CCNT1O60563 726 aaKnown RBP16.48■□□□□ 0.23
SHMT2-210ENST00000553950 ZNF76P36508 570 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 ARHGEF6Q15052 776 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 EARS2Q5JPH6 523 aaKnown RBP16.48■□□□□ 0.23
SHMT2-210ENST00000553950 NIPA1Q7RTP0 329 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 SPATA32Q96LK8 384 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 USP28Q96RU2 1077 aa16.48■□□□□ 0.23
SHMT2-210ENST00000553950 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.48■□□□□ 0.23
SHMT2-210ENST00000553950 DIS3Q9Y2L1 958 aaKnown RBP16.48■□□□□ 0.23
SHMT2-210ENST00000553950 MCM3APO60318 1980 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 DNAJC25-GNG10A0A024R161 153 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 CYP3A7-CYP3A51PA0A087WV96 503 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 FAM205CA6NFA0 338 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 TNPO2O14787 897 aaKnown RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 FIBPO43427 364 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 PTPREP23469 700 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 CYP3A7P24462 503 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 CIITAP33076 1130 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 ALDH5A1P51649 535 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 SF3A1Q15459 793 aaKnown RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 ZNF467Q7Z7K2 595 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 MSL3Q8N5Y2 521 aaKnown RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 FAM133AQ8N9E0 248 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 TMEM87AQ8NBN3 555 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 CRYGNQ8WXF5 182 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 CDHR1Q96JP9 859 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 PGBD1Q96JS3 809 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 PDCD2LQ9BRP1 358 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 RNF186Q9NXI6 227 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 COL20A1Q9P218 1284 aa16.47■□□□□ 0.23
SHMT2-210ENST00000553950 DDX25Q9UHL0 483 aaKnown RBP16.47■□□□□ 0.23
SHMT2-210ENST00000553950 DOCK3Q8IZD9 2030 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 ASB14A6NK59 587 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 PPP6R2O75170 966 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 EIF2AK2P19525 551 aaKnown RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 ADORA2AP29274 412 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 PRPHP41219 470 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 TOB1P50616 345 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 HTRA3P83110 453 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 LACTBP83111 547 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 PGM5Q15124 567 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 FOXD4L6Q3SYB3 417 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 GNPTABQ3T906 1256 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 ARL6IP4Q66PJ3 421 aaKnown RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 FAM173BQ6P4H8 233 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 FOXD4L3Q6VB84 417 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-210ENST00000553950 TBC1D5Q92609 795 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 FERMT2Q96AC1 680 aa16.46■□□□□ 0.23
SHMT2-210ENST00000553950 ADAMTS3O15072 1205 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 TBX3O15119 743 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 SPTLC2O15270 562 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 PEX10O60683 326 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 GNRH1P01148 92 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 ATP2B1P20020 1258 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 MCM7P33993 719 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 RGS2P41220 211 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 ATP2C1P98194 919 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-210ENST00000553950 SP3Q02447 781 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 SLC39A14Q15043 492 aa16.45■□□□□ 0.22
SHMT2-210ENST00000553950 Q4G0T1 1027 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms