RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 TRIM29Q14134 588 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 ASPRV1Q53RT3 343 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 GBP4Q96PP9 640 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 SLC28A3Q9HAS3 691 aa16.67■□□□□ 0.26
SHMT2-208ENST00000553868 RFXAPO00287 272 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 COBLO75128 1261 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 XBP1P17861 261 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 SMARCA1P28370 1054 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 NHLH1Q02575 133 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 GPATCH4Q5T3I0 446 aaKnown RBP16.66■□□□□ 0.26
SHMT2-208ENST00000553868 OLFML2BQ68BL8 750 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 LRRC47Q8N1G4 583 aaKnown RBP16.66■□□□□ 0.26
SHMT2-208ENST00000553868 C8orf76Q96K31 380 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 XPNPEP3Q9NQH7 507 aa16.66■□□□□ 0.26
SHMT2-208ENST00000553868 PALM3A6NDB9 673 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-208ENST00000553868 PRPF3O43395 683 aaKnown RBP16.65■□□□□ 0.26
SHMT2-208ENST00000553868 PDHBP11177 359 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 FDPSP14324 419 aaKnown RBP16.65■□□□□ 0.26
SHMT2-208ENST00000553868 MYOGP15173 224 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 GUCY1A2P33402 732 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 RABGGTBP53611 331 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 RAB30Q15771 203 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 KRT40Q6A162 431 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 MFSD5Q6N075 450 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 GMCL1P1Q8NEA9 526 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 DCAF4Q8WV16 495 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 PHKBQ93100 1093 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 LENG1Q96BZ8 264 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-208ENST00000553868 ALG1Q9BT22 464 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 TBX21Q9UL17 535 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 MTMR7Q9Y216 660 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 MTMR6Q9Y217 621 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 TRANK1O15050 2925 aa16.65■□□□□ 0.26
SHMT2-208ENST00000553868 KLRF2D3W0D1 207 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 PI4K2BG5E9Z4 385 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 PLEKHA8P1O95397 391 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 SNHG28P0DPA3 235 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 PPIGQ13427 754 aaKnown RBP eCLIP16.64■□□□□ 0.254e-10■□□□□ 8.7
SHMT2-208ENST00000553868 PKP1Q13835 747 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L2Q6R6M4 530 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 ANKRD33Q7Z3H0 272 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 CLEC10AQ8IUN9 316 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 HERVK_113Q902F9 699 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 TNPO1Q92973 898 aaKnown RBP16.64■□□□□ 0.25
SHMT2-208ENST00000553868 UIMC1Q96RL1 719 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 SPZ1Q9BXG8 430 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 GOPCQ9HD26 462 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 MAD2L2Q9UI95 211 aa16.64■□□□□ 0.25
SHMT2-208ENST00000553868 DCDC2CA8MYV0 355 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L15C9J2P7 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L13C9JLJ4 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L11C9JVI0 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L18D6R9N7 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L22D6RA61 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L17D6RBQ6 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L19D6RCP7 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L20D6RJB6 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 F13A1P00488 732 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 ZNF543Q08ER8 600 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP17L24Q0WX57 530 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 FUT2Q10981 343 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 CCDC96Q2M329 555 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 SLFN13Q68D06 897 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 CATSPERGQ6ZRH7 1159 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 CCDC82Q8N4S0 544 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 SRBD1Q8N5C6 995 aaKnown RBP16.63■□□□□ 0.25
SHMT2-208ENST00000553868 ZDHHC9Q9Y397 364 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 CNTNAP5Q8WYK1 1306 aa16.63■□□□□ 0.25
SHMT2-208ENST00000553868 USP34Q70CQ2 3546 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 RARBP10826 455 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 SLC1A4P43007 532 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 CLEC17AQ6ZS10 378 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 FAM177A1Q8N128 213 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-208ENST00000553868 FBXO18Q8NFZ0 1043 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 GMCL1Q96IK5 515 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 TOX2Q96NM4 488 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 PPP1R12CQ9BZL4 782 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 ZSCAN16Q9H4T2 348 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-208ENST00000553868 TMX2Q9Y320 296 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 MTCH2Q9Y6C9 303 aa16.62■□□□□ 0.25
SHMT2-208ENST00000553868 V9GY48 417 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-208ENST00000553868 ZNF236Q9UL36 1845 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 SPDYE16A6NNV3 312 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 PRR33A8MZF0 331 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 F5H6K3 240 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 GOLGA6L22H0YM25 854 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 DTNBO60941 627 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 PPFIA3O75145 1194 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 KLRC3Q07444 240 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 SAFBQ15424 915 aaKnown RBP eCLIP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 FOXD4L5Q5VV16 416 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 PPP2R2DQ66LE6 453 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 RNF180Q86T96 592 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 SIAH1Q8IUQ4 282 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 CMTR1Q8N1G2 835 aaKnown RBP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 STAG2Q8N3U4 1231 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 FOXD4L4Q8WXT5 416 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 RRP36Q96EU6 259 aaKnown RBP16.61■□□□□ 0.25
SHMT2-208ENST00000553868 FBXL18Q96ME1 805 aa16.61■□□□□ 0.25
SHMT2-208ENST00000553868 FEZ1Q99689 392 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms