RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 REV3LO60673 3130 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 MYL3P08590 195 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 POU3F3P20264 500 aaPredicted RBP13.9□□□□□ -0.18
CKAP4-202ENST00000552828 IGFBP4P22692 258 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 CALML3P27482 149 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 NT5C2P49902 561 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 PDE4DQ08499 809 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 PPP2R5BQ15173 497 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 GPATCH4Q5T3I0 446 aaKnown RBP13.9□□□□□ -0.18
CKAP4-202ENST00000552828 PPP2R2DQ66LE6 453 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 MFSD6Q6ZSS7 791 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 OSBPL3Q9H4L5 887 aa13.9□□□□□ -0.18
CKAP4-202ENST00000552828 GPHNQ9NQX3 736 aaPredicted RBP13.9□□□□□ -0.18
CKAP4-202ENST00000552828 RAD50Q92878 1312 aa13.9□□□□□ -0.19
CKAP4-202ENST00000552828 NCOR1O75376 2440 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 B4DLN1 442 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 MYOGP15173 224 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 MRPL12P52815 198 aaKnown RBP13.89□□□□□ -0.19
CKAP4-202ENST00000552828 HAND2P61296 217 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 NMIQ13287 307 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-202ENST00000552828 CCDC85BQ15834 202 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-202ENST00000552828 CENPQQ7L2Z9 268 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-202ENST00000552828 DGKHQ86XP1 1220 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 TBC1D10CQ8IV04 446 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 PHOSPHO2Q8TCD6 241 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 RNF41Q9H4P4 317 aaPredicted RBP13.89□□□□□ -0.19
CKAP4-202ENST00000552828 CCDC171Q6TFL3 1326 aa13.89□□□□□ -0.19
CKAP4-202ENST00000552828 ZBBXA8MT70 800 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 IQCF3P0C7M6 154 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 TXNP10599 105 aaKnown RBP13.88□□□□□ -0.19
CKAP4-202ENST00000552828 TMEM67Q5HYA8 995 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 CCDC62Q6P9F0 684 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 ADAMTS19Q8TE59 1207 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 ANKS1AQ92625 1134 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 ESR2Q92731 530 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 CCDC136Q96JN2 1154 aa13.88□□□□□ -0.19
CKAP4-202ENST00000552828 TRIM6-TRIM34B2RNG4 842 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 ARIH2O95376 493 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 ACTN1P12814 892 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 MFAP1P55081 439 aaKnown RBP13.87□□□□□ -0.19
CKAP4-202ENST00000552828 FAM47CQ5HY64 1035 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 ERICH6BQ5W0A0 696 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 DEFB128Q7Z7B8 93 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 SESTD1Q86VW0 696 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 RETREG2Q8NC44 543 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 COPS5Q92905 334 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 SLC9A7Q96T83 725 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 TSPYL2Q9H2G4 693 aaPredicted RBP13.87□□□□□ -0.19
CKAP4-202ENST00000552828 SCN10AQ9Y5Y9 1956 aa13.87□□□□□ -0.19
CKAP4-202ENST00000552828 CA3P07451 260 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 PDE4AP27815 886 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 BFSP2Q13515 415 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 CCDC178Q5BJE1 867 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 CTAGE1Q96RT6 745 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 IWS1Q96ST2 819 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 UHRF1Q96T88 793 aaPredicted RBP13.86□□□□□ -0.19
CKAP4-202ENST00000552828 MTCH2Q9Y6C9 303 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 NEDD4P46934 1319 aa13.86□□□□□ -0.19
CKAP4-202ENST00000552828 MYO9BQ13459 2157 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 ZNF213O14771 459 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 BAIAP3O94812 1187 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 GOLGA8HP0CJ92 632 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 BMP1P13497 986 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 SDSP20132 328 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 ARHGAP1Q07960 439 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 USH1GQ495M9 461 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 HERC6Q8IVU3 1022 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 PNMA1Q8ND90 353 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 CAGE1Q8TC20 777 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 SYTL5Q8TDW5 730 aaPredicted RBP13.85□□□□□ -0.19
CKAP4-202ENST00000552828 NSUN6Q8TEA1 469 aaKnown RBP13.85□□□□□ -0.19
CKAP4-202ENST00000552828 TBC1D5Q92609 795 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 KAT2BQ92831 832 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 RILPL2Q969X0 211 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 EMID1Q96A84 441 aaPredicted RBP13.85□□□□□ -0.19
CKAP4-202ENST00000552828 UBA5Q9GZZ9 404 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 CPVLQ9H3G5 476 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 ABCB11O95342 1321 aa13.85□□□□□ -0.19
CKAP4-202ENST00000552828 GH1P01241 217 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 MMP3P08254 477 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 TAP1Q03518 808 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 RBL2Q08999 1139 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 GPNMBQ14956 572 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 CDC37Q16543 378 aaPredicted RBP13.84□□□□□ -0.19
CKAP4-202ENST00000552828 PTGISQ16647 500 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 IQCA1Q86XH1 822 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 MCF2L2Q86YR7 1114 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 ADGRF4Q8IZF3 695 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 AFAP1L1Q8TED9 768 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 PPP1R13LQ8WUF5 828 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 AFG1LQ8WV93 481 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 TAAR1Q96RJ0 339 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 ZKSCAN3Q9BRR0 538 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 COL20A1Q9P218 1284 aa13.84□□□□□ -0.19
CKAP4-202ENST00000552828 EPOPA6NHQ4 379 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 KDM4AO75164 1064 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 CASTP20810 708 aaKnown RBP13.83□□□□□ -0.2
CKAP4-202ENST00000552828 STXBP2Q15833 593 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 LY6KQ17RY6 165 aa13.83□□□□□ -0.2
CKAP4-202ENST00000552828 AAK1Q2M2I8 961 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms