RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MRPL12P52815 198 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF543Q08ER8 600 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 CRAMP1Q96RY5 1269 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 FGFBP2Q9BYJ0 223 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 GLIS2Q9BZE0 524 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 TMEM39BQ9GZU3 492 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 DNAJC18Q9H819 358 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ZCCHC17Q9NP64 241 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 A0A1B0GTH6 734 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TERF1P54274 439 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 PSMC6P62333 389 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ERVK-24P63145 666 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 FAM193AP78312 1265 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 PPP2R3AQ06190 1150 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CTTNQ14247 550 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 RRP1BQ14684 758 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 SH3BP5LQ7L8J4 393 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TMC4Q7Z404 712 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 SH3RF1Q7Z6J0 888 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TPH2Q8IWU9 490 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CAGE1Q8TC20 777 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 DDX12PQ92771 950 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 MTA3Q9BTC8 594 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CCDC94Q9BW85 323 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TRIM9Q9C026 710 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ZMYND12Q9H0C1 365 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 RMND1Q9NWS8 449 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 SMARCAL1Q9NZC9 954 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 FAM237AA0A1B0GTK4 181 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 SPDYE3A6NKU9 549 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 MFAP3LO75121 409 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 NDUFB10O96000 172 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CXCR5P32302 372 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TRAPPC10P48553 1259 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 GRB10Q13322 594 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CCDC122Q5T0U0 273 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 FAM83BQ5T0W9 1011 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TRIM65Q6PJ69 517 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 RRAGAQ7L523 313 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CACNA2D4Q7Z3S7 1137 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 GPBP1Q86WP2 473 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TRIML1Q8N9V2 468 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 LARP4BQ92615 738 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 CUL5Q93034 780 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 SUGCTQ9HAC7 445 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TMOD2Q9NZR1 351 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 FAM198AQ9UFP1 575 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 IRS2Q9Y4H2 1338 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 PNMA6FA0A0J9YX94 578 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 BUB1O43683 1085 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 PRPF6O94906 941 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 IPO7O95373 1038 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 RXRBP28702 533 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 RCAN1P53805 252 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 TMED8Q6PL24 325 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 IRF2BP1Q8IU81 584 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ADSSL1Q8N142 457 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 OGFOD1Q8N543 542 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 P2RX5Q93086 422 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ELMO3Q96BJ8 720 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ERO1AQ96HE7 468 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 MMTAG2Q9BU76 263 aaKnown RBP6.24□□□□□ -1.41
LIMA1-215ENST00000552823 ADGRG1Q9Y653 693 aa6.24□□□□□ -1.41
LIMA1-215ENST00000552823 PAPPAQ13219 1627 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 A0A1W2PRG0 241 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PSDA5PKW4 1024 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 RSPH10B2B2RC85 870 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 AKR1B10O60218 316 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 RSPH10BP0C881 870 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 EPS15P42566 896 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 DLGAP5Q15398 846 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 DCAF17Q5H9S7 520 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 SLC27A3Q5K4L6 730 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 DLK2Q6UY11 383 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 TMEM139Q8IV31 216 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PROCA1Q8NCQ7 364 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PNMA5Q96PV4 448 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 SPZ1Q9BXG8 430 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 ANO3Q9BYT9 981 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 JADE2Q9NQC1 790 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 ZNHIT6Q9NWK9 470 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 PI4KBQ9UBF8 816 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 RWDD2AQ9UIY3 292 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 SAMM50Q9Y512 469 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 EPN1Q9Y6I3 576 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 CACNA1SQ13698 1873 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 ZBTB5O15062 677 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 EPHB6O15197 1021 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 KLRC4O43908 158 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 STX10O60499 249 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 HOXA10P31260 410 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 CLCN6P51797 869 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 AMPD3Q01432 767 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 ARL6IP4Q66PJ3 421 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 APTXQ7Z2E3 356 aaKnown RBP6.23□□□□□ -1.41
LIMA1-215ENST00000552823 FBXO11Q86XK2 927 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 MB21D1Q8N884 522 aa6.23□□□□□ -1.41
LIMA1-215ENST00000552823 KIAA0895Q8NCT3 520 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms