RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 FAM217BQ9NTX9 383 aaPredicted RBP29.91■■■□□ 2.38
CPSF6-205ENST00000550075 SEC24BO95487 1268 aa29.9■■■□□ 2.38
CPSF6-205ENST00000550075 EIF2AK2P19525 551 aaKnown RBP29.9■■■□□ 2.38
CPSF6-205ENST00000550075 PDIA3P30101 505 aaKnown RBP29.9■■■□□ 2.38
CPSF6-205ENST00000550075 ADD1P35611 737 aaKnown RBP29.9■■■□□ 2.38
CPSF6-205ENST00000550075 STXBP2Q15833 593 aa29.9■■■□□ 2.38
CPSF6-205ENST00000550075 TAPT1Q6NXT6 567 aa29.9■■■□□ 2.38
CPSF6-205ENST00000550075 PPP1R18Q6NYC8 613 aa29.9■■■□□ 2.38
CPSF6-205ENST00000550075 DPF3Q92784 378 aa29.9■■■□□ 2.38
CPSF6-205ENST00000550075 ADAMTS4O75173 837 aa29.89■■■□□ 2.38
CPSF6-205ENST00000550075 ANKRD1Q15327 319 aa29.89■■■□□ 2.38
CPSF6-205ENST00000550075 SMARCC2Q8TAQ2 1214 aa29.89■■■□□ 2.38
CPSF6-205ENST00000550075 SCFD2Q8WU76 684 aa29.89■■■□□ 2.38
CPSF6-205ENST00000550075 ZNF274Q96GC6 653 aaPredicted RBP29.89■■■□□ 2.38
CPSF6-205ENST00000550075 UPF3AQ9H1J1 476 aaKnown RBP29.89■■■□□ 2.38
CPSF6-205ENST00000550075 V9GY48 417 aaPredicted RBP29.89■■■□□ 2.38
CPSF6-205ENST00000550075 C6orf222P0C671 652 aaPredicted RBP29.88■■■□□ 2.37
CPSF6-205ENST00000550075 GJA9P57773 515 aa29.88■■■□□ 2.37
CPSF6-205ENST00000550075 AKAP17AQ02040 695 aaKnown RBP29.88■■■□□ 2.37
CPSF6-205ENST00000550075 FCHSD1Q86WN1 690 aa29.88■■■□□ 2.37
CPSF6-205ENST00000550075 TSEN34Q9BSV6 310 aaKnown RBP29.88■■■□□ 2.37
CPSF6-205ENST00000550075 AP5M1Q9H0R1 490 aa29.88■■■□□ 2.37
CPSF6-205ENST00000550075 PDGFCQ9NRA1 345 aa29.88■■■□□ 2.37
CPSF6-205ENST00000550075 RBM47A0AV96 593 aaKnown RBP29.87■■■□□ 2.37
CPSF6-205ENST00000550075 PIK3CDO00329 1044 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 ADCY6O43306 1168 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 NR3C2P08235 984 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 CST5P28325 142 aaPredicted RBP29.87■■■□□ 2.37
CPSF6-205ENST00000550075 NAPAP54920 295 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 TLK2Q86UE8 772 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 TEX2Q8IWB9 1127 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 GPKOWQ92917 476 aaPredicted RBP eCLIP29.87■■■□□ 2.37
CPSF6-205ENST00000550075 PDCD2LQ9BRP1 358 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 WDR11Q9BZH6 1224 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 SENP6Q9GZR1 1112 aaPredicted RBP29.87■■■□□ 2.37
CPSF6-205ENST00000550075 ALDH8A1Q9H2A2 487 aaPredicted RBP29.87■■■□□ 2.37
CPSF6-205ENST00000550075 PSTPIP2Q9H939 334 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 NR2E3Q9Y5X4 410 aa29.87■■■□□ 2.37
CPSF6-205ENST00000550075 C11orf97A0A1B0GVM6 126 aaPredicted RBP29.86■■■□□ 2.37
CPSF6-205ENST00000550075 WWC2Q6AWC2 1192 aa29.86■■■□□ 2.37
CPSF6-205ENST00000550075 CPLX2Q6PUV4 134 aaKnown RBP29.86■■■□□ 2.37
CPSF6-205ENST00000550075 PCSK9Q8NBP7 692 aaKnown RBP29.86■■■□□ 2.37
CPSF6-205ENST00000550075 PHF24Q9UPV7 400 aa29.86■■■□□ 2.37
CPSF6-205ENST00000550075 Q9Y3F1 56 aa29.86■■■□□ 2.37
CPSF6-205ENST00000550075 KIAA1217Q5T5P2 1943 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 CPLX1O14810 134 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 NKRFO15226 690 aaKnown RBP eCLIP29.85■■■□□ 2.376e-9■□□□□ 11.2
CPSF6-205ENST00000550075 EVI5O60447 810 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 SMPD1P17405 629 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 CCND2P30279 289 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 CCT2P78371 535 aaKnown RBP29.85■■■□□ 2.37
CPSF6-205ENST00000550075 TTLL4Q14679 1199 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 DUSP28Q4G0W2 176 aa29.85■■■□□ 2.37
CPSF6-205ENST00000550075 GNEQ9Y223 722 aaKnown RBP29.85■■■□□ 2.37
CPSF6-205ENST00000550075 ALPK3Q96L96 1907 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 MOXD2PA6NHM9 499 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 EIF3JO75822 258 aaKnown RBP29.84■■■□□ 2.37
CPSF6-205ENST00000550075 IFNAR1P17181 557 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 PGM5Q15124 567 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 KLHDC9Q8NEP7 349 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 RNF26Q9BY78 433 aaPredicted RBP29.84■■■□□ 2.37
CPSF6-205ENST00000550075 GLT8D2Q9H1C3 349 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 UPF2Q9HAU5 1272 aaKnown RBP29.84■■■□□ 2.37
CPSF6-205ENST00000550075 BARHL2Q9NY43 387 aa29.84■■■□□ 2.37
CPSF6-205ENST00000550075 FRMPD4Q14CM0 1322 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 MYCLP12524 364 aaPredicted RBP29.83■■■□□ 2.37
CPSF6-205ENST00000550075 SCG2P13521 617 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 NKX3-2P78367 333 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 PFKFB3Q16875 520 aaPredicted RBP29.83■■■□□ 2.37
CPSF6-205ENST00000550075 GNASQ5JWF2 1037 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 PRPF38BQ5VTL8 546 aaKnown RBP29.83■■■□□ 2.37
CPSF6-205ENST00000550075 USP17L6PQ6QN14 398 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 TRIM22Q8IYM9 498 aa29.83■■■□□ 2.37
CPSF6-205ENST00000550075 CCDC12Q8WUD4 166 aaPredicted RBP29.83■■■□□ 2.37
CPSF6-205ENST00000550075 NCOA5Q9HCD5 579 aaKnown RBP29.83■■■□□ 2.37
CPSF6-205ENST00000550075 PRPF3O43395 683 aaKnown RBP29.82■■■□□ 2.36
CPSF6-205ENST00000550075 EHMT1Q9H9B1 1298 aa29.82■■■□□ 2.36
CPSF6-205ENST00000550075 SPDYE3A6NKU9 549 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 STXBP3O00186 592 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 MEIS2O14770 477 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 DYNC1LI2O43237 492 aaPredicted RBP29.81■■■□□ 2.36
CPSF6-205ENST00000550075 ZEB2O60315 1214 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 TXNP10599 105 aaKnown RBP29.81■■■□□ 2.36
CPSF6-205ENST00000550075 ADCY7P51828 1080 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 ACLYP53396 1101 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 FSCN1Q16658 493 aaKnown RBP29.81■■■□□ 2.36
CPSF6-205ENST00000550075 SEPT14Q6ZU15 432 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 PHKBQ93100 1093 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 SLC26A6Q9BXS9 759 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 GTF3C3Q9Y5Q9 886 aa29.81■■■□□ 2.36
CPSF6-205ENST00000550075 A0A1W2PQ45 241 aaPredicted RBP29.8■■■□□ 2.36
CPSF6-205ENST00000550075 A0A1W2PQY0 241 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 MYADML2A6NDP7 307 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 STAM2O75886 525 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 NEK4P51957 841 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 AK2P54819 239 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 STK3Q13188 491 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 NTRK3Q16288 839 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 KCNA10Q16322 511 aa29.8■■■□□ 2.36
CPSF6-205ENST00000550075 BRDTQ58F21 947 aaPredicted RBP29.8■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms