RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CDK2AP1O14519 115 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 COBLO75128 1261 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 PGK1P00558 417 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 BRD2P25440 801 aaKnown RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 ADORA2AP29274 412 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 MRE11P49959 708 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 DNM1Q05193 864 aaKnown RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 FAAP100Q0VG06 881 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 DDX10Q13206 875 aaKnown RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 RASIP1Q5U651 963 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 LIAT1Q6ZQX7 453 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 TEX11Q8IYF3 940 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 SLC44A5Q8NCS7 719 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 ZDHHC1Q8WTX9 485 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 LENG1Q96BZ8 264 aaPredicted RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 EIF4ENIF1Q9NRA8 985 aaKnown RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 PGPEP1Q9NXJ5 209 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 ZBTB21Q9ULJ3 1066 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 A0A0G2JMZ2 1700 aa8□□□□□ -1.13
LIMA1-204ENST00000549064 MYO5AQ9Y4I1 1855 aaKnown RBP8□□□□□ -1.13
LIMA1-204ENST00000549064 PNMA6FA0A0J9YX94 578 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 TIMP1P01033 207 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 CSF2RAP15509 400 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 PSMD2Q13200 908 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 OLFML2BQ68BL8 750 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 SPTY2D1Q68D10 685 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-204ENST00000549064 PI16Q6UXB8 463 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 CATSPERGQ6ZRH7 1159 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 ZNF365Q70YC5 407 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 ETFBKMTQ8IXQ9 262 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 ALDH16A1Q8IZ83 802 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 SH3RF3Q8TEJ3 882 aaPredicted RBP7.99□□□□□ -1.13
LIMA1-204ENST00000549064 NSUN4Q96CB9 384 aaKnown RBP7.99□□□□□ -1.13
LIMA1-204ENST00000549064 ESYT1Q9BSJ8 1104 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 MOV10L1Q9BXT6 1211 aaKnown RBP7.99□□□□□ -1.13
LIMA1-204ENST00000549064 XPNPEP3Q9NQH7 507 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 KLK14Q9P0G3 267 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 PI4KBQ9UBF8 816 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 VTI1BQ9UEU0 232 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 HRH3Q9Y5N1 445 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 MYH1P12882 1939 aa7.99□□□□□ -1.13
LIMA1-204ENST00000549064 DCDC2CA8MYV0 355 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 RFXAPO00287 272 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 SORBS3O60504 671 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 GH2P01242 217 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 ADH1AP07327 375 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 MYOGP15173 224 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 VCAM1P19320 739 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 NOS2P35228 1153 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 RABGGTBP53611 331 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 TIMM10P62072 90 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 CBLBQ13191 982 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 PPIGQ13427 754 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 RAB30Q15771 203 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 AAK1Q2M2I8 961 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 MFSD5Q6N075 450 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 ANKRD33Q7Z3H0 272 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 MAPKAPK5Q8IW41 473 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 CRACR2BQ8N4Y2 399 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 KDF1Q8NAX2 398 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 EDEM1Q92611 657 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 ALKBH8Q96BT7 664 aaKnown RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 MRGPRX2Q96LB1 330 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 C12orf42Q96LP6 360 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 FEZ1Q99689 392 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 USP44Q9H0E7 712 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 SLC28A3Q9HAS3 691 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 CD320Q9NPF0 282 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 MSRAQ9UJ68 235 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 TBX21Q9UL17 535 aa7.98□□□□□ -1.13
LIMA1-204ENST00000549064 PA2G4Q9UQ80 394 aaKnown RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 COL11A1P12107 1806 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 PDS5AQ29RF7 1337 aaKnown RBP7.98□□□□□ -1.13
LIMA1-204ENST00000549064 SMIM22K7EJ46 135 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 ERC2O15083 957 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 PDGFAP04085 211 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 LDHCP07864 332 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 RARBP10826 455 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 TAL1P17542 331 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 ZAP70P43403 619 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 DAB2P98082 770 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 FGD1P98174 961 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 TEAD4Q15561 434 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 ENOX2Q16206 610 aaKnown RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 KRT40Q6A162 431 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 LBX2Q6XYB7 198 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 RNF180Q86T96 592 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 GJD3Q8N144 294 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 ACER1Q8TDN7 264 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 TGFBRAP1Q8WUH2 860 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 EMID1Q96A84 441 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 PHACTR1Q9C0D0 580 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 DHX36Q9H2U1 1008 aaKnown RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 RPAP3Q9H6T3 665 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 PRKRIP1Q9H875 184 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 STARD7Q9NQZ5 370 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 AATFQ9NY61 560 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMA1-204ENST00000549064 RAI14Q9P0K7 980 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 HMG20BQ9P0W2 317 aa7.97□□□□□ -1.13
LIMA1-204ENST00000549064 SAP30BPQ9UHR5 308 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms