RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ARHGEF6Q15052 776 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 UBE2SQ16763 222 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 PLEKHH3Q7Z736 793 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 ZNF467Q7Z7K2 595 aaPredicted RBP18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 TBCKQ8TEA7 893 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 SOCS4Q8WXH5 440 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 RTEL1Q9NZ71 1219 aa18.24■□□□□ 0.51
PRPF40A-212ENST00000545856 LRRC37A2A6NM11 1700 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 GOLGA6L22H0YM25 854 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 POTEB2H3BUK9 544 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 GNRH1P01148 92 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 ARHGAP4P98171 946 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 GRB14Q14449 540 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 TTC38Q5R3I4 469 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 NIPA1Q7RTP0 329 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 MSL3Q8N5Y2 521 aaKnown RBP18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 JMYQ8N9B5 988 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 FAM133AQ8N9E0 248 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 MBOAT7Q96N66 472 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 RMDN3Q96TC7 470 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 PORCNQ9H237 461 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 CPA4Q9UI42 421 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 ELP1O95163 1332 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 DOCK3Q8IZD9 2030 aa18.23■□□□□ 0.51
PRPF40A-212ENST00000545856 KIAA1217Q5T5P2 1943 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 PTMSP20962 102 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 PTPREP23469 700 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 HOXA13P31271 388 aaPredicted RBP18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 SETQ01105 290 aaPredicted RBP18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 KIF22Q14807 665 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 INF2Q27J81 1249 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 PCNX4Q63HM2 1172 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 SLC30A10Q6XR72 485 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 GPR142Q7Z601 462 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 RASGRP4Q8TDF6 673 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 KCNG4Q8TDN1 519 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 PXMP2Q9NR77 195 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 RNF186Q9NXI6 227 aa18.22■□□□□ 0.51
PRPF40A-212ENST00000545856 TBX3O15119 743 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 HOXC6P09630 235 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 ANO1Q5XXA6 986 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 ARL6IP4Q66PJ3 421 aaKnown RBP18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 FCHSD1Q86WN1 690 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 PDCD2LQ9BRP1 358 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 BEGAINQ9BUH8 593 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 EFCC1Q9HA90 598 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 TMEM260Q9NX78 707 aa18.21■□□□□ 0.51
PRPF40A-212ENST00000545856 ASB14A6NK59 587 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 MAFGO15525 162 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 BAG4O95429 457 aaKnown RBP18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 CCND2P30279 289 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 PRPHP41219 470 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 TOB1P50616 345 aaPredicted RBP18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 FCGRTP55899 365 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 Q4G0T1 1027 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 EARS2Q5JPH6 523 aaKnown RBP18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 ARHGEF16Q5VV41 709 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 TMEM87AQ8NBN3 555 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 TBC1D5Q92609 795 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 CDHR1Q96JP9 859 aa18.2■□□□□ 0.5
PRPF40A-212ENST00000545856 PPP6R2O75170 966 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 TAL1P17542 331 aaPredicted RBP18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 EDNRBP24530 442 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 LACTBP83111 547 aaPredicted RBP18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 SP3Q02447 781 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 DNM1Q05193 864 aaKnown RBP18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 SLC39A14Q15043 492 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 WDR78Q5VTH9 848 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 FOXD4L5Q5VV16 416 aaPredicted RBP18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 VSIG10LQ86VR7 867 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 MORC4Q8TE76 937 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 FOXD4L4Q8WXT5 416 aaPredicted RBP18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 USP28Q96RU2 1077 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 COL20A1Q9P218 1284 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 RCOR1Q9UKL0 485 aa18.19■□□□□ 0.5
PRPF40A-212ENST00000545856 NEMFO60524 1076 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 CCNT1O60563 726 aaKnown RBP18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 ADORA2AP29274 412 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 ALDH5A1P51649 535 aaPredicted RBP18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 PGM5Q15124 567 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 STK38Q15208 465 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 LETM2Q2VYF4 491 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 GNPTABQ3T906 1256 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 CEP55Q53EZ4 464 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 MORN1Q5T089 497 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 TRMT44Q8IYL2 757 aaKnown RBP18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 LINC00301Q8NCQ3 95 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 FERMT2Q96AC1 680 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 NUDT12Q9BQG2 462 aa18.18■□□□□ 0.5
PRPF40A-212ENST00000545856 TNPO2O14787 897 aaKnown RBP18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 ADAMTS3O15072 1205 aa18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 EIF3JO75822 258 aaKnown RBP18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 NR3C2P08235 984 aa18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 XRCC5P13010 732 aaKnown RBP18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 RGS2P41220 211 aa18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 PRMT2P55345 433 aa18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 ATP2C1P98194 919 aaPredicted RBP18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 MAP2K5Q13163 448 aa18.17■□□□□ 0.5
PRPF40A-212ENST00000545856 SF3A1Q15459 793 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms