RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HERC5Q9UII4 1024 aaKnown RBP7.08□□□□□ -1.28
SYNE1-239ENST00000545694 ZNRF3Q9ULT6 936 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 STX8Q9UNK0 236 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 CD2APQ9Y5K6 639 aa7.08□□□□□ -1.28
SYNE1-239ENST00000545694 BTBD18B2RXH4 712 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 C21orf2O43822 256 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 PLEKHA8P1O95397 391 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SLURP2P0DP57 97 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 RPS12P25398 132 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 GUCY1A2P33402 732 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 NLRP5P59047 1200 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SEMA3FQ13275 785 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 TNIP1Q15025 636 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 AOC3Q16853 763 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 DALRD3Q5D0E6 543 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 CT47A1Q5JQC4 288 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 AXDND1Q5T1B0 1012 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 RESP18Q5W5W9 173 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 ARL6IP4Q66PJ3 421 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 MCTP2Q6DN12 878 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 OTUD7BQ6GQQ9 843 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 TATDN1Q6P1N9 297 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 TMEM179Q6ZVK1 233 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 FAM83AQ86UY5 434 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 NIM1KQ8IY84 436 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 FMR1NBQ8N0W7 255 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 LARGE2Q8N3Y3 721 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 RRP36Q96EU6 259 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 CEP95Q96GE4 821 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SDF4Q9BRK5 362 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 RBSNQ9H1K0 784 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 RIOX1Q9H6W3 641 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 KANSL2Q9H9L4 492 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 CYLDQ9NQC7 956 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 GINM1Q9NU53 330 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 CUEDC1Q9NWM3 386 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 BARHL2Q9NY43 387 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 NYAP2Q9P242 653 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SEC63Q9UGP8 760 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 PCDHA4Q9UN74 947 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 HPSEQ9Y251 543 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SRPRBQ9Y5M8 271 aaKnown RBP7.07□□□□□ -1.28
SYNE1-239ENST00000545694 CLIC4Q9Y696 253 aa7.07□□□□□ -1.28
SYNE1-239ENST00000545694 SIPA1L1O43166 1804 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DICER1Q9UPY3 1922 aaKnown RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 KLRF2D3W0D1 207 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 F8W031 263 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 MYO1BO43795 1136 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 NMT2O60551 498 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 ARHGEF15O94989 841 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 TPM3P06753 285 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DPEP1P16444 411 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 RHOQP17081 205 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 KCNA3P22001 575 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 SHMT1P34896 483 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 IRS1P35568 1242 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 SYKP43405 635 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 SCNN1DP51172 638 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 RBM5P52756 815 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 CEBPZQ03701 1054 aaKnown RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 TYRO3Q06418 890 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 PICALMQ13492 652 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DHX8Q14562 1220 aaKnown RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 STX1AQ16623 288 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 OLFM4Q6UX06 510 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 PRICKLE2Q7Z3G6 844 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 KRT25Q7Z3Z0 450 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DEFB132Q7Z7B7 95 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 KIAA0825Q8IV33 1275 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 BLIDQ8IZY5 108 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DCAF4Q8WV16 495 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 JDP2Q8WYK2 163 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 TNFRSF25Q93038 417 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 AIFM3Q96NN9 605 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 GMLQ99445 158 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 NAP1L4Q99733 375 aaKnown RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 BPIFA3Q9BQP9 254 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 ZMYND12Q9H0C1 365 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 C6orf50Q9HD87 102 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 DDX4Q9NQI0 724 aaKnown RBP7.06□□□□□ -1.28
SYNE1-239ENST00000545694 VPS54Q9P1Q0 977 aa7.06□□□□□ -1.28
SYNE1-239ENST00000545694 CCDC194A0A1B0GVG4 234 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 ESPNB1AK53 854 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 SMIM22K7EJ46 135 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 ZNF202O95125 648 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 PDHBP11177 359 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 RFC5P40937 340 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 PRPHP41219 470 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 TNNI2P48788 182 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 TOB1P50616 345 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-239ENST00000545694 MARSP56192 900 aaKnown RBP7.05□□□□□ -1.28
SYNE1-239ENST00000545694 TNFAIP1Q13829 316 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 DLGAP5Q15398 846 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 CFAP100Q494V2 611 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 CERKLQ49MI3 558 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-239ENST00000545694 LYPD4Q6UWN0 246 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 LYSMD3Q7Z3D4 306 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 SLC51AQ86UW1 340 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 CEP57L1Q8IYX8 460 aa7.05□□□□□ -1.28
SYNE1-239ENST00000545694 CCDC82Q8N4S0 544 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms