RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 TSPY3P0CV98 308 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 TSPY8P0CW00 308 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 TDO2P48775 406 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 CHMP4BP1P59074 171 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 PTPN11Q06124 597 aaPredicted RBP11.16□□□□□ -0.62
CHD4-212ENST00000545083 PTGISQ16647 500 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 CSPP1Q1MSJ5 1256 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 LRRFIP1Q32MZ4 808 aaKnown RBP11.16□□□□□ -0.62
CHD4-212ENST00000545083 RCSD1Q6JBY9 416 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 GDF6Q6KF10 455 aaPredicted RBP11.16□□□□□ -0.62
CHD4-212ENST00000545083 FAM117BQ6P1L5 589 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 SLC30A10Q6XR72 485 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 NEK9Q8TD19 979 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 AFAP1L1Q8TED9 768 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 PHOX2BQ99453 314 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 C17orf80Q9BSJ5 609 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 ADD3Q9UEY8 706 aaKnown RBP11.16□□□□□ -0.62
CHD4-212ENST00000545083 NOD1Q9Y239 953 aa11.16□□□□□ -0.62
CHD4-212ENST00000545083 TRIP12Q14669 1992 aaPredicted RBP11.16□□□□□ -0.62
CHD4-212ENST00000545083 RAB11FIP3O75154 756 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 ARIH2O95376 493 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 ICAM1P05362 532 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 SELPP16109 830 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 TFAP4Q01664 338 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 PPP2R5BQ15173 497 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 CNKSR3Q6P9H4 555 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 HFE2Q6ZVN8 426 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 LRRC8DQ7L1W4 858 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 CAGE1Q8TC20 777 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 APPBP2Q92624 585 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 ZNF287Q9HBT7 754 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 USP34Q70CQ2 3546 aa11.15□□□□□ -0.62
CHD4-212ENST00000545083 PTPDC1A2A3K4 754 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 NMT2O60551 498 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 KPNA6O60684 536 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 EDNRBP24530 442 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 SLC16A2P36021 539 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 ZP2Q05996 745 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 BRDTQ58F21 947 aaPredicted RBP11.14□□□□□ -0.63
CHD4-212ENST00000545083 TTBK2Q6IQ55 1244 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 IFNL3Q8IZI9 196 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 KBTBD3Q8NAB2 608 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 CLEC4DQ8WXI8 215 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 KAT2BQ92831 832 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 KCNH6Q9H252 994 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 RANBP17Q9H2T7 1088 aaKnown RBP11.14□□□□□ -0.63
CHD4-212ENST00000545083 INCENPQ9NQS7 918 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 IL17RBQ9NRM6 502 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 STX8Q9UNK0 236 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 MTMR7Q9Y216 660 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 SIP14410 1827 aa11.14□□□□□ -0.63
CHD4-212ENST00000545083 MYO7AQ13402 2215 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 LOC102724159A0A0B4J2E5 919 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 C19orf67A6NJJ6 358 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 NKRFO15226 690 aaKnown RBP eCLIP11.13□□□□□ -0.63
CHD4-212ENST00000545083 RNF113AO15541 343 aaKnown RBP11.13□□□□□ -0.63
CHD4-212ENST00000545083 SMARCA5O60264 1052 aaPredicted RBP11.13□□□□□ -0.63
CHD4-212ENST00000545083 HMMRO75330 724 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 APPP05067 770 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 CKBP12277 381 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 CALML3P27482 149 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 PDE4DQ08499 809 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 RBL2Q08999 1139 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 MBTPS1Q14703 1052 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 PWP2Q15269 919 aaKnown RBP11.13□□□□□ -0.63
CHD4-212ENST00000545083 TRAF7Q6Q0C0 670 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.13□□□□□ -0.633e-12■■■■■ 52.2
CHD4-212ENST00000545083 CCDC155Q8N6L0 562 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 FBXO22Q8NEZ5 403 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 SCFD2Q8WU76 684 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 WNT8BQ93098 351 aa11.13□□□□□ -0.63
CHD4-212ENST00000545083 MRPL38Q96DV4 380 aaKnown RBP11.13□□□□□ -0.63
CHD4-212ENST00000545083 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.13□□□□□ -0.63
CHD4-212ENST00000545083 RAD50Q92878 1312 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 TECTAO75443 2155 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 ABHD14A-ACY1A0A1B0GW23 586 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 PATL2C9JE40 543 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 TXNP10599 105 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 IRS1P35568 1242 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 RPS6P62753 249 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 PDE4BQ07343 736 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 PPARAQ07869 468 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 MKRN4PQ13434 485 aaPredicted RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 COL19A1Q14993 1142 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 CCDC96Q2M329 555 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 TRIM71Q2Q1W2 868 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 PUS10Q3MIT2 529 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 TSHZ3Q63HK5 1081 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 SESTD1Q86VW0 696 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 AFG1LQ8WV93 481 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 CRBNQ96SW2 442 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 SEC62Q99442 399 aaKnown RBP11.12□□□□□ -0.63
CHD4-212ENST00000545083 C5orf42Q9H799 3197 aa11.12□□□□□ -0.63
CHD4-212ENST00000545083 ZDBF2Q9HCK1 2354 aa11.11□□□□□ -0.63
CHD4-212ENST00000545083 MMP3P08254 477 aa11.11□□□□□ -0.63
CHD4-212ENST00000545083 GNAT2P19087 354 aa11.11□□□□□ -0.63
CHD4-212ENST00000545083 HTRA4P83105 476 aaPredicted RBP11.11□□□□□ -0.63
CHD4-212ENST00000545083 ARHGAP1Q07960 439 aa11.11□□□□□ -0.63
CHD4-212ENST00000545083 IKBKEQ14164 716 aa11.11□□□□□ -0.63
CHD4-212ENST00000545083 EPC2Q52LR7 807 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms