RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 ZBED4O75132 1171 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 EEF2P13639 858 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 SMPD1P17405 629 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 AVPR2P30518 371 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 RFC2P35250 354 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 VCPP55072 806 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 ERVK-21P61565 698 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 GPM6BQ13491 265 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 PTPROQ16827 1216 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 NBPF20Q3BBV1 942 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 MYSM1Q5VVJ2 828 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 KIAA1211Q6ZU35 1233 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 BMP8AQ7Z5Y6 402 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 BANK1Q8NDB2 785 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 TET1Q8NFU7 2136 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 KIFC2Q96AC6 838 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 CHMP4CQ96CF2 233 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 PABPC5Q96DU9 382 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 MRPL38Q96DV4 380 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 POP1Q99575 1024 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 DBNDD2Q9BQY9 259 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 TEX13BQ9BXU2 312 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 SEZ6LQ9BYH1 1024 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 IRF2BPLQ9H1B7 796 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 CTNNA3Q9UI47 895 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 ISY1Q9ULR0 285 aaKnown RBP5.76□□□□□ -1.49
LIMS1-214ENST00000542845 ADAMTS5Q9UNA0 930 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 HDAC5Q9UQL6 1122 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 PLXNA3P51805 1871 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 KMT2EQ8IZD2 1858 aa5.76□□□□□ -1.49
LIMS1-214ENST00000542845 NAV1Q8NEY1 1877 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 BRWD1Q9NSI6 2320 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 MAGEB6P1A0A0J9YX57 407 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 MED19A0JLT2 244 aaPredicted RBP5.75□□□□□ -1.49
LIMS1-214ENST00000542845 BAIAP3O94812 1187 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 GJB5O95377 273 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 ZXDAP98168 799 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 OS9Q13438 667 aaPredicted RBP5.75□□□□□ -1.49
LIMS1-214ENST00000542845 BFSP2Q13515 415 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 PKN1Q16512 942 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 IQSEC1Q6DN90 963 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 RPAINQ86UA6 219 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 FBXO16Q8IX29 292 aaPredicted RBP5.75□□□□□ -1.49
LIMS1-214ENST00000542845 ADSSL1Q8N142 457 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 STK11IPQ8N1F8 1099 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 REPS2Q8NFH8 660 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 SDR42E1Q8WUS8 393 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 SSH1Q8WYL5 1049 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 CNTNAP3BQ96NU0 1288 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 MEIS3Q99687 375 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 SLF1Q9BQI6 1058 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 FSD1Q9BTV5 496 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 TMUB1Q9BVT8 246 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 CNTNAP3Q9BZ76 1288 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 KATNBL1Q9H079 304 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 PLA2G2EQ9NZK7 142 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 GNEQ9Y223 722 aaKnown RBP5.75□□□□□ -1.49
LIMS1-214ENST00000542845 COG6Q9Y2V7 657 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 ADGRG1Q9Y653 693 aa5.75□□□□□ -1.49
LIMS1-214ENST00000542845 PRR23AA6NEV1 266 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 ASB14A6NK59 587 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 MBTPS2O43462 519 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 UPP2O95045 317 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 GABPAQ06546 454 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 DLX2Q07687 328 aaPredicted RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 IKBKEQ14164 716 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 SMAD2Q15796 467 aaKnown RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 PTGISQ16647 500 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 TCTN1Q2MV58 587 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 EPC2Q52LR7 807 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 TIGD5Q53EQ6 642 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 CNKSR3Q6P9H4 555 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 DGLUCYQ7Z3D6 616 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 FRMD5Q7Z6J6 570 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 PRPF38AQ8NAV1 312 aaKnown RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 ZDHHC16Q969W1 377 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 FGD4Q96M96 766 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 MTG1Q9BT17 334 aaPredicted RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 CRNKL1Q9BZJ0 848 aaKnown RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 CCDC8Q9H0W5 538 aaPredicted RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 BCL11AQ9H165 835 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 NSUN3Q9H649 340 aaKnown RBP5.74□□□□□ -1.49
LIMS1-214ENST00000542845 ANTXR1Q9H6X2 564 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 FBXO40Q9UH90 709 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 INSL6Q9Y581 213 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 TECTAO75443 2155 aa5.74□□□□□ -1.49
LIMS1-214ENST00000542845 CFAP54Q96N23 3096 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 NLRC5Q86WI3 1866 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 TANC1Q9C0D5 1861 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 CYP2D7A0A087X1C5 515 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 USP17L12C9JPN9 530 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 USP17L21D6R901 530 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 LINC01565O15544 149 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 PDGFBP01127 241 aaPredicted RBP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 GTF2F1P35269 517 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 LTBRP36941 435 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 RFC5P40937 340 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 CDK8P49336 464 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 CPT1AP50416 773 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 NKX3-2P78367 333 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms