RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZBTB7BO15156 539 aaPredicted RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 NDUFA10O95299 355 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 MYBL1P10243 752 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 RRS1Q15050 365 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 TTLL7Q6ZT98 887 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TESK2Q96S53 571 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.49□□□□□ -0.897e-8■■□□□ 12.5
YBX3-208ENST00000540447 NLRP2Q9NX02 1062 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 LRWD1Q9UFC0 647 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 LCA5LO95447 670 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 GRAMD1AQ96CP6 724 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DACH2Q96NX9 599 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TGS1Q96RS0 853 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 GGT7Q9UJ14 662 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TLK1Q9UKI8 766 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ARL2BPQ9Y2Y0 163 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 FHOD1Q9Y613 1164 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 PLEKHG2Q9H7P9 1386 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 A0A1B0GW55 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L2P0CJ85 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L3P0CJ86 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L4P0CJ87 422 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L5P0CJ88 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L6P0CJ89 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4L7P0CJ90 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ICA1Q05084 483 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 SWT1Q5T5J6 900 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 TRMT1LQ7Z2T5 733 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 RSAD2Q8WXG1 361 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 RAPGEF5Q92565 580 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 STAMQ92783 540 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 NAF1Q96HR8 494 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 ZFYVE19Q96K21 471 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 NT5C3AQ9H0P0 336 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 DUX4Q9UBX2 424 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 AFG3L2Q9Y4W6 797 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 RTL9Q8NET4 1388 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 SBNO2Q9Y2G9 1366 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 CCT8L1PA6NM43 557 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ADARP55265 1226 aaKnown RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 ATG16L1Q676U5 607 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 TRPM8Q7Z2W7 1104 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ADCK1Q86TW2 530 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ARHGEF25Q86VW2 580 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 ST13P5Q8NFI4 369 aaPredicted RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 ITFG2Q969R8 447 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 OSBPL5Q9H0X9 879 aaPredicted RBP9.49□□□□□ -0.89
YBX3-208ENST00000540447 CABP1Q9NZU7 370 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 LCMT1Q9UIC8 334 aa9.49□□□□□ -0.89
YBX3-208ENST00000540447 SFI1A8K8P3 1242 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 NOP56O00567 594 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 CALUO43852 315 aaPredicted RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 SRGAP2O75044 1071 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 TRHP20396 242 aaPredicted RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 ROR2Q01974 943 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 PDE4BQ07343 736 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 NONOQ15233 471 aaKnown RBP eCLIP9.48□□□□□ -0.89
YBX3-208ENST00000540447 ZBTB41Q5SVQ8 909 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 MTA3Q9BTC8 594 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 AZI2Q9H6S1 392 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 POLE3Q9NRF9 147 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 R3HDM2Q9Y2K5 976 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 COPG1Q9Y678 874 aaKnown RBP9.48□□□□□ -0.89
YBX3-208ENST00000540447 PARD3Q8TEW0 1356 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 IGF2BP3O00425 579 aaKnown RBP eCLIP9.48□□□□□ -0.89
YBX3-208ENST00000540447 EXOC5O00471 708 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 P4HA2O15460 535 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 H2AFZP0C0S5 128 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 EPHB1P54762 984 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 KRT81Q14533 505 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 CYP4F22Q6NT55 531 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 H2AFVQ71UI9 128 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SPATA21Q7Z572 469 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 RAD21L1Q9H4I0 556 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SYBUQ9NX95 663 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 HPCAL4Q9UM19 191 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SLC4A4Q9Y6R1 1079 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 PIK3R4Q99570 1358 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 PGM1P36871 562 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 NAPAP54920 295 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 TFAP4Q01664 338 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 CATSPER3Q86XQ3 398 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.48□□□□□ -0.89
YBX3-208ENST00000540447 CALML6Q8TD86 181 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 TM6SF1Q9BZW5 370 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 SESN1Q9Y6P5 492 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 A0A087WWV3 80 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 FAM107AO95990 144 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 CALM1P0DP23 149 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 CALM2P0DP24 149 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 CALM3P0DP25 149 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 GNAQP50148 359 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 RAB14P61106 215 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 PPP2R5DQ14738 602 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 TRIM15Q9C019 465 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 BRD8Q9H0E9 1235 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 DEFA1P59665 94 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 DEFA3P59666 94 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 TEDDM1Q5T9Z0 273 aa9.48□□□□□ -0.89
YBX3-208ENST00000540447 HEATR4Q86WZ0 1026 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms