RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 QRICH1Q2TAL8 776 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 SYDE2Q5VT97 1194 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 UNC13DQ70J99 1090 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 JAKMIP2Q96AA8 810 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.98□□□□□ -0.49
CLIP1-213ENST00000540338 MYH3P11055 1940 aa11.98□□□□□ -0.49
CLIP1-213ENST00000540338 LGALS16A8MUM7 142 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L15C9J2P7 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L13C9JLJ4 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L11C9JVI0 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L18D6R9N7 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L22D6RA61 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L17D6RBQ6 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L19D6RCP7 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L20D6RJB6 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 RHOBTB3O94955 611 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 GH2P01242 217 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L24Q0WX57 530 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 PSMD2Q13200 908 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 PDIA5Q14554 519 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 CCDC174Q6PII3 467 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 USP17L6PQ6QN14 398 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 SYCP3Q8IZU3 236 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 KIFC2Q96AC6 838 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 JMJD4Q9H9V9 463 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 ABCA3Q99758 1704 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 F5H6K3 240 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 KLRC3Q07444 240 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 TYW1BQ6NUM6 668 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 TAF4BQ92750 862 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 TSGA10Q9BZW7 698 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 RIOX1Q9H6W3 641 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 C21orf2O43822 256 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 GNA14O95837 355 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 CEP89Q96ST8 783 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 HAUS4Q9H6D7 363 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 CHMP2AO43633 222 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 AP3B2Q13367 1082 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 MAP9Q49MG5 647 aa11.97□□□□□ -0.49
CLIP1-213ENST00000540338 RAD17O75943 681 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 CHRNA5P30532 468 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 LRRC41Q15345 812 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 CCDC93Q567U6 631 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 HS2ST1Q7LGA3 356 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 C7orf25Q9BPX7 421 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 NYAP2Q9P242 653 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 MKRN1Q9UHC7 482 aaKnown RBP11.96□□□□□ -0.49
CLIP1-213ENST00000540338 MACROD2A1Z1Q3 448 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 WNT7AO00755 349 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 CTIFO43310 598 aaKnown RBP11.96□□□□□ -0.49
CLIP1-213ENST00000540338 ARID5AQ03989 594 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 GIMAP8Q8ND71 665 aaPredicted RBP11.96□□□□□ -0.49
CLIP1-213ENST00000540338 DDX12PQ92771 950 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 RUFY1Q96T51 708 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 ABHD10Q9NUJ1 306 aa11.96□□□□□ -0.49
CLIP1-213ENST00000540338 GCOM1H8Y6P7 765 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-213ENST00000540338 POLR2MP0CAP2 368 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 NFIAQ12857 509 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 NAA30Q147X3 362 aaPredicted RBP11.96□□□□□ -0.5
CLIP1-213ENST00000540338 RASGRP2Q7LDG7 609 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 ACRBPQ8NEB7 543 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 RAD54LQ92698 747 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 DRC1Q96MC2 740 aa11.96□□□□□ -0.5
CLIP1-213ENST00000540338 MRPL11Q9Y3B7 192 aaKnown RBP11.96□□□□□ -0.5
CLIP1-213ENST00000540338 TUBBP07437 444 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 HDLBPQ00341 1268 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 FKBP3Q00688 224 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 E2F4Q16254 413 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 MAN2A1Q16706 1144 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 STYK1Q6J9G0 422 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 RRAGAQ7L523 313 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 GPR161Q8N6U8 529 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 TTLL6Q8N841 843 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 ADGRG1Q9Y653 693 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 ROBO3Q96MS0 1386 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 ITIH6Q6UXX5 1313 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 CALUO43852 315 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 SNAP25P60880 206 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 LRRC63Q05C16 580 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 CDKAL1Q5VV42 579 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 RTKN2Q8IZC4 609 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 ZDHHC15Q96MV8 337 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 MYO1AQ9UBC5 1043 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 PLA2G4BP0C869 781 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 ZBED6P86452 979 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 TRMT1LQ7Z2T5 733 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 SPATA20Q8TB22 786 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 KBTBD4Q9NVX7 518 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 USP11P51784 963 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 STAT2P52630 851 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 DDX4Q9NQI0 724 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 SEPT11Q9NVA2 429 aaKnown RBP11.95□□□□□ -0.5
CLIP1-213ENST00000540338 CDC23Q9UJX2 597 aa11.95□□□□□ -0.5
CLIP1-213ENST00000540338 A0A1W2PQC6 194 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 NDUFA10O95299 355 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 RHOXF2BP0C7M4 288 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 EPB41P11171 864 aaKnown RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 FCER1AP12319 257 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 BAG6P46379 1132 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 CETN1Q12798 172 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms