RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 MUTYHQ9UIF7 546 aa14.34□□□□□ -0.11
YBX3-207ENST00000539204 LOC102724159A0A0B4J2E5 919 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 NCK2O43639 380 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 CXCL10P02778 98 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 SLC1A4P43007 532 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 PWP2Q15269 919 aaKnown RBP14.33□□□□□ -0.12
YBX3-207ENST00000539204 ZKSCAN2Q63HK3 967 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 LRRC8DQ7L1W4 858 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 EDAQ92838 391 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 PBXIP1Q96AQ6 731 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 POP1Q99575 1024 aaKnown RBP14.33□□□□□ -0.12
YBX3-207ENST00000539204 BOLA2Q9H3K6 86 aa14.33□□□□□ -0.12
YBX3-207ENST00000539204 ZFHX2Q9C0A1 2572 aaPredicted RBP14.33□□□□□ -0.12
YBX3-207ENST00000539204 ZDBF2Q9HCK1 2354 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 GFRA3O60609 400 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 NBNO60934 754 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 BAATQ14032 418 aaPredicted RBP14.32□□□□□ -0.12
YBX3-207ENST00000539204 PPP2R5BQ15173 497 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 EPC2Q52LR7 807 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 TCEAL5Q5H9L2 206 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 ZSCAN25Q6NSZ9 544 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 SAMD11Q96NU1 681 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 PUS7LQ9H0K6 701 aaKnown RBP14.32□□□□□ -0.12
YBX3-207ENST00000539204 BCL11AQ9H165 835 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 CLDND1Q9NY35 253 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 CACNA1AO00555 2505 aa14.32□□□□□ -0.12
YBX3-207ENST00000539204 TRIP12Q14669 1992 aaPredicted RBP14.31□□□□□ -0.12
YBX3-207ENST00000539204 H3BNC9 293 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 PLA2G6O60733 806 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 PRDM1O75626 825 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 CHGBP05060 677 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 MCCP23508 829 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 ALDH5A1P51649 535 aaPredicted RBP14.31□□□□□ -0.12
YBX3-207ENST00000539204 SNAP25P60880 206 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 TCF15Q12870 199 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 GPM6BQ13491 265 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 SMAD2Q15796 467 aaKnown RBP14.31□□□□□ -0.12
YBX3-207ENST00000539204 GIMAP6Q6P9H5 292 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 RNF135Q8IUD6 432 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 SUGP1Q8IWZ8 645 aaKnown RBP14.31□□□□□ -0.12
YBX3-207ENST00000539204 CHMP4CQ96CF2 233 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 CCPG1Q9ULG6 757 aa14.31□□□□□ -0.12
YBX3-207ENST00000539204 AMHP03971 560 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 TSPY3P0CV98 308 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 TSPY8P0CW00 308 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 TXNP10599 105 aaKnown RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 CKBP12277 381 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 COL19A1Q14993 1142 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 TCTN1Q2MV58 587 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 RCSD1Q6JBY9 416 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 GDF6Q6KF10 455 aaPredicted RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 CEP85Q6P2H3 762 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 TRIM67Q6ZTA4 783 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 SESTD1Q86VW0 696 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 SCFD2Q8WU76 684 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 COPS5Q92905 334 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 GMCL1Q96IK5 515 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 STRBPQ96SI9 672 aaKnown RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 MPHOSPH6Q99547 160 aaKnown RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 IRF2BPLQ9H1B7 796 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 NSUN3Q9H649 340 aaKnown RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 SCN10AQ9Y5Y9 1956 aa14.3□□□□□ -0.12
YBX3-207ENST00000539204 PTPRZ1P23471 2315 aaPredicted RBP14.3□□□□□ -0.12
YBX3-207ENST00000539204 C5orf42Q9H799 3197 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 PTPDC1A2A3K4 754 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 TMEM221A6NGB7 291 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 GSG1L2A8MUP6 293 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 M0R296 226 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 LTBRP36941 435 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 HTRA4P83105 476 aaPredicted RBP14.29□□□□□ -0.12
YBX3-207ENST00000539204 PDE4DQ08499 809 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 RBL2Q08999 1139 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.29□□□□□ -0.122e-7■■■■□ 25
YBX3-207ENST00000539204 KCTD1Q719H9 257 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 ITPRIPQ8IWB1 547 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 KIF1BPQ96EK5 621 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 CTAGE1Q96RT6 745 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 HAUS7Q99871 368 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 PRR12Q9ULL5 1215 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 PTPRSQ13332 1948 aa14.29□□□□□ -0.12
YBX3-207ENST00000539204 ICAM1P05362 532 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 ATP5JP18859 108 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 PDE4BQ07343 736 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 FTSJ3Q8IY81 847 aaKnown RBP14.28□□□□□ -0.12
YBX3-207ENST00000539204 TMEM192Q8IY95 271 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 MYOCDQ8IZQ8 938 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 NEDD1Q8NHV4 660 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 SP7Q8TDD2 431 aaPredicted RBP14.28□□□□□ -0.12
YBX3-207ENST00000539204 DHX38Q92620 1227 aaKnown RBP14.28□□□□□ -0.12
YBX3-207ENST00000539204 ATOH1Q92858 354 aaPredicted RBP14.28□□□□□ -0.12
YBX3-207ENST00000539204 GREB1LQ9C091 1923 aaPredicted RBP14.28□□□□□ -0.12
YBX3-207ENST00000539204 MYO15AQ9UKN7 3530 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 SPTBN4Q9H254 2564 aa14.28□□□□□ -0.12
YBX3-207ENST00000539204 TECTAO75443 2155 aa14.27□□□□□ -0.12
YBX3-207ENST00000539204 SIP14410 1827 aa14.27□□□□□ -0.12
YBX3-207ENST00000539204 B4DLN1 442 aa14.27□□□□□ -0.13
YBX3-207ENST00000539204 STXBP3O00186 592 aa14.27□□□□□ -0.13
YBX3-207ENST00000539204 MBTPS2O43462 519 aa14.27□□□□□ -0.13
YBX3-207ENST00000539204 LGR5O75473 907 aa14.27□□□□□ -0.13
YBX3-207ENST00000539204 CASTP20810 708 aaKnown RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms