RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 HMGB1P1B2RPK0 211 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 UBAP1LF5GYI3 381 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 H0YGN5 161 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 IGF2BP3O00425 579 aaKnown RBP eCLIP11.78□□□□□ -0.52
RTN3-208ENST00000537981 ATP6V1G1O75348 118 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 HOXD11P31277 338 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 ABCD1P33897 745 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 VAV2P52735 878 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 ZNF844Q08AG5 666 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 LTV1Q96GA3 475 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 NEUROG2Q9H2A3 272 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 MMADHCQ9H3L0 296 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 DNAAF2Q9NVR5 837 aaKnown RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 WDR35Q9P2L0 1181 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 NOVA2Q9UNW9 492 aaKnown RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 NFS1Q9Y697 457 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 CCDC194A0A1B0GVG4 234 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 BTBD18B2RXH4 712 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 FOXP2O15409 715 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 PRC1O43663 620 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 KRT86O43790 486 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 CDKL5O76039 1030 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 ALADP13716 330 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 HSD17B3P37058 310 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 RFC5P40937 340 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 TFCP2Q12800 502 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 ZNF268Q14587 947 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 TTF1Q15361 905 aaPredicted RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 ODF2Q5BJF6 829 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 CCDC70Q6NSX1 233 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 NAF1Q96HR8 494 aaKnown RBP11.78□□□□□ -0.52
RTN3-208ENST00000537981 CSRNP2Q9H175 543 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 GDF3Q9NR23 364 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 ADAM22Q9P0K1 906 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 DACH1Q9UI36 760 aa11.78□□□□□ -0.52
RTN3-208ENST00000537981 GPR75-ASB3A0A0A6YYF3 556 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 RASSF10A6NK89 507 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 SH2B2O14492 632 aaPredicted RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 UBOX5O94941 541 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 OATP04181 439 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 MAGOHP61326 146 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 MYBPC3Q14896 1274 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 TMC4Q7Z404 712 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 CD302Q8IX05 232 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 CCDC170Q8IYT3 715 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 MAGOHBQ96A72 148 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 PURBQ96QR8 312 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 NHEJ1Q9H9Q4 299 aaPredicted RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 KCNJ14Q9UNX9 436 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 ASB3Q9Y575 518 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 ALKQ9UM73 1620 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 FAM205CA6NFA0 338 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 GHRP10912 638 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 IMPDH2P12268 514 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 MYL6BP14649 208 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 NQO1P15559 274 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 GUCY1A2P33402 732 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 GNAQP50148 359 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 NCALDP61601 193 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 RIPK1Q13546 671 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 RRP12Q5JTH9 1297 aaKnown RBP11.77□□□□□ -0.53
RTN3-208ENST00000537981 ARMCX6Q7L4S7 300 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 KRT12Q99456 494 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 EYA1Q99502 592 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 TRIM4Q9C037 500 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 TBC1D2BQ9UPU7 963 aa11.77□□□□□ -0.53
RTN3-208ENST00000537981 KCNJ18B7U540 433 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 RANBP6O60518 1105 aaKnown RBP11.76□□□□□ -0.53
RTN3-208ENST00000537981 RARAP10276 462 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 RFX1P22670 979 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 NR5A1Q13285 461 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 KCNJ12Q14500 433 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 TCP11X2Q5H9J9 407 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 LONP2Q86WA8 852 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 IRF2BP1Q8IU81 584 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 LARGE2Q8N3Y3 721 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 UCMAQ8WVF2 138 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 RBM17Q96I25 401 aaKnown RBP11.76□□□□□ -0.53
RTN3-208ENST00000537981 DNAJC7Q99615 494 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 SPOCK3Q9BQ16 436 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 PHACTR1Q9C0D0 580 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 PNMA3Q9UL41 463 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 PACSIN2Q9UNF0 486 aaPredicted RBP11.76□□□□□ -0.53
RTN3-208ENST00000537981 LRRC37A3O60309 1634 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 UBN2Q6ZU65 1347 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 ANO9A1A5B4 782 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 ORC4O43929 436 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 SPATA31D3P0C874 917 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 CNGA1P29973 690 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 ECHS1P30084 290 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 MAGEA8P43361 318 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 PPP2R2AP63151 447 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 SMYD5Q6GMV2 418 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 SPATA31D4Q6ZUB0 917 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 CTAGE1Q96RT6 745 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 TSPAN18Q96SJ8 248 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 PREBQ9HCU5 417 aa11.76□□□□□ -0.53
RTN3-208ENST00000537981 LIMA1Q9UHB6 759 aaKnown RBP11.76□□□□□ -0.53
RTN3-208ENST00000537981 TSKSQ9UJT2 592 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms