RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 H7C0C1 242 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 CMA1P23946 247 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 ATP5OP48047 213 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 POLR2FP61218 127 aaKnown RBP11.6□□□□□ -0.55
CLIP1-209ENST00000537178 PRPSAP1Q14558 356 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 PSTPIP2Q9H939 334 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 AS3MTQ9HBK9 375 aa11.6□□□□□ -0.55
CLIP1-209ENST00000537178 hCG_1642624A0A1W2PR95 340 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 K7ENM7 598 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 MYO1FO00160 1098 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 BUB1O43683 1085 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ABL1P00519 1130 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 OR52Z1P0C646 297 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ATP5JP18859 108 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 PPARAQ07869 468 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TCP10Q12799 353 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SNCBQ16143 134 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SPATA1Q5VX52 437 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ARMCX5Q6P1M9 558 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 RNF169Q8NCN4 708 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 UIMC1Q96RL1 719 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TRIM4Q9C037 500 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 EPN1Q9Y6I3 576 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TESPA1A2RU30 521 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 A6NJR5 290 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TAF5LO75529 589 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SAT1P21673 171 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 PTK2Q05397 1052 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TCIRG1Q13488 830 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 NEK8Q86SG6 692 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 CCDC197Q8NCU1 140 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SPZ1Q9BXG8 430 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SEPT10Q9P0V9 454 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 HSPA8P11142 646 aaKnown RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 RSBN1LQ6PCB5 846 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 KRT26Q7Z3Y9 468 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 SKA2Q8WVK7 121 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 PANK4Q9NVE7 773 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ZNF215Q9UL58 517 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ANGPTL3Q9Y5C1 460 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ORC6Q9Y5N6 252 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 MAP3K19Q56UN5 1328 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 RBM6P78332 1123 aaKnown RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 ADAM9Q13443 819 aa11.59□□□□□ -0.55
CLIP1-209ENST00000537178 UHMK1Q8TAS1 419 aaKnown RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 TPX2Q9ULW0 747 aaKnown RBP11.59□□□□□ -0.55
CLIP1-209ENST00000537178 APOEP02649 317 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 SRGAP2BP0DMP2 458 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 TMOD1P28289 359 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CDR2Q01850 454 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 GCKRQ14397 625 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 FAM47CQ5HY64 1035 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CHMP6Q96FZ7 201 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 EIF2AQ9BY44 585 aaKnown RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 SALL3Q9BXA9 1300 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 XPOTO43592 962 aaKnown RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 ARHGEF16Q5VV41 709 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 RABGGTAQ92696 567 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 PPWD1Q96BP3 646 aaKnown RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 FAM193BQ96PV7 902 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 MRPL46Q9H2W6 279 aaKnown RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CSADQ9Y600 493 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CDK12Q9NYV4 1490 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 POLR2MP0CAP2 368 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 EEF1GP26641 437 aaKnown RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 NIM1KQ8IY84 436 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 MCUQ8NE86 351 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 TRIM11Q96F44 468 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 SUCLG2Q96I99 432 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 MAGEF1Q9HAY2 307 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CCDC87Q9NVE4 849 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 SOS2Q07890 1332 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 ITSN1Q15811 1721 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 USP17L12C9JPN9 530 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 USP17L21D6R901 530 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 GUCY2DQ02846 1103 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 IQCB1Q15051 598 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 FAM47AQ5JRC9 791 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 TMTC3Q6ZXV5 915 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 MCF2L2Q86YR7 1114 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 SCYL3Q8IZE3 742 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 CCDC127Q96BQ5 260 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 MYCBPQ99417 103 aaPredicted RBP11.58□□□□□ -0.56
CLIP1-209ENST00000537178 TMEM63CQ9P1W3 806 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 ATP7BP35670 1465 aa11.58□□□□□ -0.56
CLIP1-209ENST00000537178 PFDN1O60925 122 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 DLATP10515 647 aaKnown RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 TECP42680 631 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 KPNA2P52292 529 aaKnown RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 EXOC3L4Q17RC7 722 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ZNF449Q6P9G9 518 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 RASEFQ8IZ41 740 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ANKRD35Q8N283 1001 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ATP6V1E2Q96A05 226 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 MAGOHBQ96A72 148 aaKnown RBP11.57□□□□□ -0.56
CLIP1-209ENST00000537178 CCDC138Q96M89 665 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 TEKT3Q9BXF9 490 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 GNGT2O14610 69 aa11.57□□□□□ -0.56
CLIP1-209ENST00000537178 ZNF500O60304 480 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms