RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	PC	P11498	1178 aa	Known RBP	13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	CPT1A	P50416	773 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	PSMC6	P62333	389 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	PURA	Q00577	322 aa	Known RBP	13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	ADGRE1	Q14246	886 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	SYDE2	Q5VT97	1194 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	TTBK2	Q6IQ55	1244 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	EEPD1	Q7L9B9	569 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	CLEC4D	Q8WXI8	215 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	ASB2	Q96Q27	587 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	PURB	Q96QR8	312 aa	Known RBP	13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	TMEM47	Q9BQJ4	181 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	PCDHA11	Q9Y5I1	949 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	SLC4A7	Q9Y6M7	1214 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	VCAN	P13611	3396 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	CHD9	Q3L8U1	2897 aa		13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	TNFRSF10A	O00220	468 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	NFIB	O00712	420 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	KPNA6	O60684	536 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	SNHG28	P0DPA3	235 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	PTGS1	P23219	599 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	EDNRB	P24530	442 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	SLC16A2	P36021	539 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	CCL23	P55773	120 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	MCM6	Q14566	821 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	CCDC96	Q2M329	555 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	MCMDC2	Q4G0Z9	681 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	TMCO4	Q5TGY1	634 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	RASGRP2	Q7LDG7	609 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	OTOP2	Q7RTS6	562 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	DNER	Q8NFT8	737 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	CHMP4C	Q96CF2	233 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	NKX2-4	Q9H2Z4	354 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	YBX2	Q9Y2T7	364 aa	Known RBP	13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	WDR19	Q8NEZ3	1342 aa		13.58	□□□□□ -0.24
CTNND1-238	ENST00000534647	LRRC37A2	A6NM11	1700 aa		13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	PDHB	P11177	359 aa		13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	POU3F3	P20264	500 aa	Predicted RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	NT5C2	P49902	561 aa		13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	PDE1A	P54750	535 aa		13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	MRPS5	P82675	430 aa	Known RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	PTPN11	Q06124	597 aa	Predicted RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	BRDT	Q58F21	947 aa	Predicted RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	MPHOSPH6	Q99547	160 aa	Known RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	MTG1	Q9BT17	334 aa	Predicted RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	THEG	Q9P2T0	379 aa		13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.57	□□□□□ -0.24
CTNND1-238	ENST00000534647	PTPDC1	A2A3K4	754 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647		B4DLN1	442 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	PITPNM1	O00562	1244 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	HSPD1	P10809	573 aa	Known RBP	13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	RFC2	P35250	354 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	MRPL12	P52815	198 aa	Known RBP	13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	ZNF543	Q08ER8	600 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	ANKRD45	Q5TZF3	282 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	NFRKB	Q6P4R8	1299 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	RNF207	Q6ZRF8	634 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	SCFD2	Q8WU76	684 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	CCDC97	Q96F63	343 aa	Predicted RBP	13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	GPHN	Q9NQX3	736 aa	Predicted RBP	13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	TRMT13	Q9NUP7	481 aa	Known RBP	13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	MTMR7	Q9Y216	660 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	TNKS	O95271	1327 aa		13.56	□□□□□ -0.24
CTNND1-238	ENST00000534647	ATP2A2	P16615	1042 aa	Known RBP	13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	RPS6	P62753	249 aa	Known RBP	13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	HDAC1	Q13547	482 aa	Predicted RBP	13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	NBPF20	Q3BBV1	942 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	GPATCH4	Q5T3I0	446 aa	Known RBP	13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	SLC30A10	Q6XR72	485 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	PHOSPHO2	Q8TCD6	241 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	SCLY	Q96I15	445 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	FAM227B	Q96M60	508 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	GPCPD1	Q9NPB8	672 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	TOMM22	Q9NS69	142 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647	RAD50	Q92878	1312 aa		13.55	□□□□□ -0.24
CTNND1-238	ENST00000534647		A0A0D9SFI3	127 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	MYL3	P08590	195 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	CYP2C9	P11712	490 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	ACTN1	P12814	892 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	IGFBP4	P22692	258 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	CALML3	P27482	149 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	TTLL4	Q14679	1199 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	PPP2R5B	Q15173	497 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	PPP2R2D	Q66LE6	453 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	MFSD6	Q6ZSS7	791 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	DGKH	Q86XP1	1220 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	OR6J1	Q8NGC5	347 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	PPM1E	Q8WY54	764 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	LCT	P09848	1927 aa		13.54	□□□□□ -0.24
CTNND1-238	ENST00000534647	IQCF3	P0C7M6	154 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	TXN	P10599	105 aa	Known RBP	13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	RABGGTB	P53611	331 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	CCDC178	Q5BJE1	867 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	TMEM67	Q5HYA8	995 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	RRP12	Q5JTH9	1297 aa	Known RBP	13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	CCDC62	Q6P9F0	684 aa		13.53	□□□□□ -0.24
CTNND1-238	ENST00000534647	ANKS1A	Q92625	1134 aa		13.53	□□□□□ -0.24

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