RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 FSD1Q9BTV5 496 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 PRKRIP1Q9H875 184 aaPredicted RBP7.84□□□□□ -1.15
CD44-237ENST00000534082 CLDND1Q9NY35 253 aa7.84□□□□□ -1.15
CD44-237ENST00000534082 GNEQ9Y223 722 aaKnown RBP7.84□□□□□ -1.15
CD44-237ENST00000534082 BAHCC1Q9P281 2608 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 NAV1Q8NEY1 1877 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 H0Y858 1186 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 DYNC1LI2O43237 492 aaPredicted RBP7.83□□□□□ -1.16
CD44-237ENST00000534082 GJB5O95377 273 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 CYP2E1P05181 493 aaPredicted RBP7.83□□□□□ -1.16
CD44-237ENST00000534082 CLUL1Q15846 466 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 SWT1Q5T5J6 900 aaKnown RBP7.83□□□□□ -1.16
CD44-237ENST00000534082 SIAH1Q8IUQ4 282 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 ANKRD35Q8N283 1001 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 RETREG2Q8NC44 543 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 C17orf80Q9BSJ5 609 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 PIH1D3Q9NQM4 214 aaKnown RBP7.83□□□□□ -1.16
CD44-237ENST00000534082 TLR9Q9NR96 1032 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 CTNNA3Q9UI47 895 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 SALL2Q9Y467 1007 aaPredicted RBP7.83□□□□□ -1.16
CD44-237ENST00000534082 RIPK3Q9Y572 518 aa7.83□□□□□ -1.16
CD44-237ENST00000534082 TPRP12270 2363 aaKnown RBP7.82□□□□□ -1.16
CD44-237ENST00000534082 STXBP3O00186 592 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 MBTPS2O43462 519 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 KDM4AO75164 1064 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 POLR3DP05423 398 aaPredicted RBP7.82□□□□□ -1.16
CD44-237ENST00000534082 SMPD1P17405 629 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 SLC4A3P48751 1232 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 ZXDAP98168 799 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 DDX10Q13206 875 aaKnown RBP7.82□□□□□ -1.16
CD44-237ENST00000534082 FAM47CQ5HY64 1035 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 TTC39AQ5SRH9 613 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 FAM83BQ5T0W9 1011 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 RPAINQ86UA6 219 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 TTC13Q8NBP0 860 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 NSUN3Q9H649 340 aaKnown RBP7.82□□□□□ -1.16
CD44-237ENST00000534082 TET1Q8NFU7 2136 aa7.82□□□□□ -1.16
CD44-237ENST00000534082 CHD8Q9HCK8 2581 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 SRGAP3O43295 1099 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 RAD21O60216 631 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 IGSF3O75054 1194 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 IDH1O75874 414 aaKnown RBP7.81□□□□□ -1.16
CD44-237ENST00000534082 AKR1B1P15121 316 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 AVPR2P30518 371 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 LTBRP36941 435 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 NBL1P41271 181 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 ZAP70P43403 619 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 PTGDRQ13258 359 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 SMAD4Q13485 552 aaKnown RBP7.81□□□□□ -1.16
CD44-237ENST00000534082 BFSP2Q13515 415 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 FAM117BQ6P1L5 589 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 CNKSR3Q6P9H4 555 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.81□□□□□ -1.16
CD44-237ENST00000534082 SLF1Q9BQI6 1058 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 POLR3EQ9NVU0 708 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 ACACBO00763 2458 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 PKD1L2Q7Z442 2459 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 WDR87Q6ZQQ6 2873 aa7.81□□□□□ -1.16
CD44-237ENST00000534082 MYO5AQ9Y4I1 1855 aaKnown RBP7.81□□□□□ -1.16
CD44-237ENST00000534082 PURAQ00577 322 aaKnown RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 CNTN2Q02246 1040 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 DLX2Q07687 328 aaPredicted RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 SIGLEC14Q08ET2 396 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 LRRFIP1Q32MZ4 808 aaKnown RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 TMEM63BQ5T3F8 832 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 FBXO16Q8IX29 292 aaPredicted RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 CPXCR1Q8N123 301 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 ADSSL1Q8N142 457 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 AFAP1L1Q8TED9 768 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 PPP1R13LQ8WUF5 828 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 ASIC4Q96FT7 647 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 CNTNAP3BQ96NU0 1288 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 NUP88Q99567 741 aaPredicted RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 MTG1Q9BT17 334 aaPredicted RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 CNTNAP3Q9BZ76 1288 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 GOPCQ9HD26 462 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 PDGFCQ9NRA1 345 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 MCM9Q9NXL9 1143 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 SWAP70Q9UH65 585 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 FBXO40Q9UH90 709 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 HDAC5Q9UQL6 1122 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 NOD1Q9Y239 953 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 Q9Y3F1 56 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 DDX49Q9Y6V7 483 aaKnown RBP7.8□□□□□ -1.16
CD44-237ENST00000534082 ZNF292O60281 2723 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 CHD6Q8TD26 2715 aa7.8□□□□□ -1.16
CD44-237ENST00000534082 ABHD14A-ACY1A0A1B0GW23 586 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 ASB14A6NK59 587 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 ATP2A1O14983 1001 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 NCK2O43639 380 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 TBX10O75333 385 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 MYL3P08590 195 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 CYP2D6P10635 497 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 EEF2P13639 858 aaKnown RBP7.79□□□□□ -1.16
CD44-237ENST00000534082 GPM6BQ13491 265 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 GPNMBQ14956 572 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 TCTN1Q2MV58 587 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 CTC1Q2NKJ3 1217 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 NBPF20Q3BBV1 942 aa7.79□□□□□ -1.16
CD44-237ENST00000534082 EPC2Q52LR7 807 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms