RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, human

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD9-208	ENST00000533643	RMDN3	Q96TC7	470 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	NUDT12	Q9BQG2	462 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	ANO3	Q9BYT9	981 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	PXMP2	Q9NR77	195 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	GABRQ	Q9UN88	632 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	FRMPD4	Q14CM0	1322 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	RPTOR	Q8N122	1335 aa		13.62	□□□□□ -0.23
COMMD9-208	ENST00000533643	CCDC194	A0A1B0GVG4	234 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	EDIL3	O43854	480 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	HOXC6	P09630	235 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	HSPA1A	P0DMV8	641 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	HSPA1B	P0DMV9	641 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	HSPA8	P11142	646 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	EIF2AK2	P19525	551 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	UBXN2A	P68543	259 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	NONO	Q15233	471 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	DNER	Q8NFT8	737 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	IL31RA	Q8NI17	732 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	NPLOC4	Q8TAT6	608 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	NSUN6	Q8TEA1	469 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	CRYGN	Q8WXF5	182 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	SOCS4	Q8WXH5	440 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	SRRD	Q9UH36	339 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	DIS3	Q9Y2L1	958 aa	Known RBP	13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	ZSWIM8	A7E2V4	1837 aa		13.61	□□□□□ -0.23
COMMD9-208	ENST00000533643	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	PLXNB2	O15031	1838 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	GNRH1	P01148	92 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	CYP2B6	P20813	491 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	SREBF1	P36956	1147 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	RGS2	P41220	211 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	FLT3LG	P49771	235 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	PRKCZ	Q05513	592 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	ARHGEF6	Q15052	776 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	INF2	Q27J81	1249 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	ARHGEF16	Q5VV41	709 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	BRAP	Q7Z569	592 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	TBCK	Q8TEA7	893 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	PDCD2L	Q9BRP1	358 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	EHMT1	Q9H9B1	1298 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	SLC5A4	Q9NY91	659 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	ADD3	Q9UEY8	706 aa	Known RBP	13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	DDX49	Q9Y6V7	483 aa	Known RBP	13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	ZNF236	Q9UL36	1845 aa		13.6	□□□□□ -0.23
COMMD9-208	ENST00000533643	F13A1	P00488	732 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	NR3C2	P08235	984 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	CYP3A4	P08684	503 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	XRCC5	P13010	732 aa	Known RBP	13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	EDNRB	P24530	442 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	HOXD10	P28358	340 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	CTCF	P49711	727 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	ALDH5A1	P51649	535 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	NUCB2	P80303	420 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	ARHGAP4	P98171	946 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	PGM5	Q15124	567 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	VSIG10L	Q86VR7	867 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	MAML3	Q96JK9	1138 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	IWS1	Q96ST2	819 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	APBA2	Q99767	749 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	CHMP5	Q9NZZ3	219 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	MGAM	O43451	1857 aa		13.59	□□□□□ -0.23
COMMD9-208	ENST00000533643	LCT	P09848	1927 aa		13.58	□□□□□ -0.23
COMMD9-208	ENST00000533643	LOC102724159	A0A0B4J2E5	919 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	ASB14	A6NK59	587 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	IGHA2	P01877	340 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	MYCL	P12524	364 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	CCND2	P30279	289 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	TOB1	P50616	345 aa	Predicted RBP	13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	USP11	P51784	963 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	LBX1	P52954	281 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	MRPS9	P82933	396 aa	Known RBP	13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	PWP2	Q15269	919 aa	Known RBP	13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	CCL14	Q16627	93 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	PCNX4	Q63HM2	1172 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	FAM173B	Q6P4H8	233 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	MAMDC4	Q6UXC1	1216 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	OTOP1	Q7RTM1	612 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	MORC4	Q8TE76	937 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	FLRT1	Q9NZU1	646 aa		13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.58	□□□□□ -0.24
COMMD9-208	ENST00000533643	DOCK3	Q8IZD9	2030 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643		B4DLN1	442 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	WNT7A	O00755	349 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	ATP2B1	P20020	1258 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	CYP3A7	P24462	503 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	PDE4D	Q08499	809 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	IRF5	Q13568	498 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	MYSM1	Q5VVJ2	828 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	OLFML2B	Q68BL8	750 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	XRRA1	Q6P2D8	792 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	NEK8	Q86SG6	692 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	MSL3	Q8N5Y2	521 aa	Known RBP	13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	ZFP91	Q96JP5	570 aa	Predicted RBP	13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	TINF2	Q9BSI4	451 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	TRIM17	Q9Y577	477 aa		13.57	□□□□□ -0.24
COMMD9-208	ENST00000533643	SNAI1	O95863	264 aa	Predicted RBP	13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms