RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 KLHDC9Q8NEP7 349 aa16.71■□□□□ 0.27
FOXR1-202ENST00000531539 VTI1AQ96AJ9 217 aa16.71■□□□□ 0.27
FOXR1-202ENST00000531539 IWS1Q96ST2 819 aa16.71■□□□□ 0.27
FOXR1-202ENST00000531539 TSEN34Q9BSV6 310 aaKnown RBP16.71■□□□□ 0.27
FOXR1-202ENST00000531539 UPF3BQ9BZI7 483 aaKnown RBP16.71■□□□□ 0.27
FOXR1-202ENST00000531539 TM6SF1Q9BZW5 370 aa16.71■□□□□ 0.27
FOXR1-202ENST00000531539 FAM217BQ9NTX9 383 aaPredicted RBP16.71■□□□□ 0.27
FOXR1-202ENST00000531539 PHF24Q9UPV7 400 aa16.71■□□□□ 0.27
FOXR1-202ENST00000531539 MYADML2A6NDP7 307 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 SEC24BO95487 1268 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 NR3C2P08235 984 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 MYCLP12524 364 aaPredicted RBP16.7■□□□□ 0.26
FOXR1-202ENST00000531539 METAP2P50579 478 aaKnown RBP eCLIP16.7■□□□□ 0.26
FOXR1-202ENST00000531539 ACLYP53396 1101 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 BEX3Q00994 111 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 SEPT14Q6ZU15 432 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 LARP6Q9BRS8 491 aaKnown RBP16.7■□□□□ 0.26
FOXR1-202ENST00000531539 UPF3AQ9H1J1 476 aaKnown RBP16.7■□□□□ 0.26
FOXR1-202ENST00000531539 PXMP2Q9NR77 195 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 PDRG1Q9NUG6 133 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 GNEQ9Y223 722 aaKnown RBP16.7■□□□□ 0.26
FOXR1-202ENST00000531539 MYH6P13533 1939 aa16.7■□□□□ 0.26
FOXR1-202ENST00000531539 BRCA2P51587 3418 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 CCDC196A0A1B0GTZ2 297 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 RBM47A0AV96 593 aaKnown RBP16.69■□□□□ 0.26
FOXR1-202ENST00000531539 EIF5BO60841 1220 aaKnown RBP16.69■□□□□ 0.26
FOXR1-202ENST00000531539 TXNP10599 105 aaKnown RBP16.69■□□□□ 0.26
FOXR1-202ENST00000531539 GHRHRQ02643 423 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 PPP2R5BQ15173 497 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 DUSP28Q4G0W2 176 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 USP17L6PQ6QN14 398 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 HEATR3Q7Z4Q2 680 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 TLK2Q86UE8 772 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 FBXL16Q8N461 479 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 PCSK9Q8NBP7 692 aaKnown RBP16.69■□□□□ 0.26
FOXR1-202ENST00000531539 SMARCC2Q8TAQ2 1214 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 CUL5Q93034 780 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 PSTPIP2Q9H939 334 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 ZMYND8Q9ULU4 1186 aaPredicted RBP16.69■□□□□ 0.26
FOXR1-202ENST00000531539 ATP11BQ9Y2G3 1177 aa16.69■□□□□ 0.26
FOXR1-202ENST00000531539 EIF3JO75822 258 aaKnown RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 ASGR1P07306 291 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 PDIA3P30101 505 aaKnown RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 RCAN1P53805 252 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 CCT2P78371 535 aaKnown RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 FUT2Q10981 343 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 TOB2Q14106 344 aaPredicted RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 CCSAPQ6IQ19 270 aaPredicted RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 SCFD2Q8WU76 684 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 GPKOWQ92917 476 aaPredicted RBP eCLIP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 ZFP91Q96JP5 570 aaPredicted RBP16.68■□□□□ 0.26
FOXR1-202ENST00000531539 PDCD2LQ9BRP1 358 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 AGXT2Q9BYV1 514 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 Q9Y3F1 56 aa16.68■□□□□ 0.26
FOXR1-202ENST00000531539 A0A1W2PQ45 241 aaPredicted RBP16.67■□□□□ 0.26
FOXR1-202ENST00000531539 A0A1W2PQY0 241 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 CTAGE5O15320 804 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 SYN1P17600 705 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 CST5P28325 142 aaPredicted RBP16.67■□□□□ 0.26
FOXR1-202ENST00000531539 RTP1P59025 263 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 TTLL4Q14679 1199 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 PGM5Q15124 567 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 FSCN1Q16658 493 aaKnown RBP16.67■□□□□ 0.26
FOXR1-202ENST00000531539 VSIG10LQ86VR7 867 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 COPS5Q92905 334 aa16.67■□□□□ 0.26
FOXR1-202ENST00000531539 LCTP09848 1927 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 MOXD2PA6NHM9 499 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 MEIS2O14770 477 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 ZEB2O60315 1214 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 LY6KQ17RY6 165 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 OR6J1Q8NGC5 347 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 STARD7Q9NQZ5 370 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 CNTNAP5Q8WYK1 1306 aa16.66■□□□□ 0.26
FOXR1-202ENST00000531539 MKI67P46013 3256 aaKnown RBP16.65■□□□□ 0.26
FOXR1-202ENST00000531539 NKRFO15226 690 aaKnown RBP eCLIP16.65■□□□□ 0.26
FOXR1-202ENST00000531539 PPFIA3O75145 1194 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 ARIH2O95376 493 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 CCND2P30279 289 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 NAPAP54920 295 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 EVCP57679 992 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 ANAPC15P60006 121 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 NKX3-2P78367 333 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 STK3Q13188 491 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 TRIM60Q495X7 471 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 WWC2Q6AWC2 1192 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 IL31RAQ8NI17 732 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 GLT1D1Q96MS3 346 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 NCOA5Q9HCD5 579 aaKnown RBP16.65■□□□□ 0.26
FOXR1-202ENST00000531539 FRMPD3Q5JV73 1810 aa16.65■□□□□ 0.26
FOXR1-202ENST00000531539 CEP290O15078 2479 aa16.64■□□□□ 0.26
FOXR1-202ENST00000531539 MYL3P08590 195 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 AKAP17AQ02040 695 aaKnown RBP16.64■□□□□ 0.25
FOXR1-202ENST00000531539 TLE2Q04725 743 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 UBE2SQ16763 222 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 CCDC62Q6P9F0 684 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 CXCL17Q6UXB2 119 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 PHKBQ93100 1093 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 ZNF274Q96GC6 653 aaPredicted RBP16.64■□□□□ 0.25
FOXR1-202ENST00000531539 RTEL1Q9NZ71 1219 aa16.64■□□□□ 0.25
FOXR1-202ENST00000531539 PCDH10Q9P2E7 1040 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms