RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 VPS9D1Q9Y2B5 631 aa9.91□□□□□ -0.82
CD44-232ENST00000531118 LINC01553A4QN01 128 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 E9PSI1 815 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 DYNC1LI2O43237 492 aaPredicted RBP9.9□□□□□ -0.82
CD44-232ENST00000531118 IQCF3P0C7M6 154 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 IRS1P35568 1242 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 TCF15Q12870 199 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 OS9Q13438 667 aaPredicted RBP9.9□□□□□ -0.82
CD44-232ENST00000531118 TIGD5Q53EQ6 642 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 ADGRD1Q6QNK2 874 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 PACS2Q86VP3 889 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 ADHFE1Q8IWW8 467 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 FAM133AQ8N9E0 248 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 CHST13Q8NET6 341 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 RAVER2Q9HCJ3 691 aaKnown RBP9.9□□□□□ -0.82
CD44-232ENST00000531118 FAM86C1Q9NVL1 165 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 MUTYHQ9UIF7 546 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 RABGEF1Q9UJ41 708 aa9.9□□□□□ -0.82
CD44-232ENST00000531118 DDX49Q9Y6V7 483 aaKnown RBP9.9□□□□□ -0.82
CD44-232ENST00000531118 ASB14A6NK59 587 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 NDUFB10O96000 172 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 GNAI2P04899 355 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 PDE6AP16499 860 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 CDK8P49336 464 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 PURAQ00577 322 aaKnown RBP9.89□□□□□ -0.83
CD44-232ENST00000531118 PROX2Q3B8N5 592 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 HERC4Q5GLZ8 1057 aaPredicted RBP9.89□□□□□ -0.83
CD44-232ENST00000531118 C16orf86Q6ZW13 317 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 ACAD9Q9H845 621 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 KANSL2Q9H9L4 492 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 SLC38A10Q9HBR0 1119 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 A1CFQ9NQ94 594 aaKnown RBP9.89□□□□□ -0.83
CD44-232ENST00000531118 PDGFCQ9NRA1 345 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 HOMER2Q9NSB8 354 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 FAM50BQ9Y247 325 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 Q9Y3F1 56 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 C5orf42Q9H799 3197 aa9.89□□□□□ -0.83
CD44-232ENST00000531118 CYP2D7A0A087X1C5 515 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 SOWAHBA6NEL2 793 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 ZBED4O75132 1171 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 GJB5O95377 273 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 BFSP2Q13515 415 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 FAM47CQ5HY64 1035 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 TMEM63BQ5T3F8 832 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 TAPT1Q6NXT6 567 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 RETREG2Q8NC44 543 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 PABPC5Q96DU9 382 aaKnown RBP9.88□□□□□ -0.83
CD44-232ENST00000531118 MRPL38Q96DV4 380 aaKnown RBP9.88□□□□□ -0.83
CD44-232ENST00000531118 PRRX2Q99811 253 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 UPF3BQ9BZI7 483 aaKnown RBP9.88□□□□□ -0.83
CD44-232ENST00000531118 CCDC8Q9H0W5 538 aaPredicted RBP9.88□□□□□ -0.83
CD44-232ENST00000531118 POLR3EQ9NVU0 708 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 CTDP1Q9Y5B0 961 aaPredicted RBP9.88□□□□□ -0.83
CD44-232ENST00000531118 EPG5Q9HCE0 2579 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 DMDP11532 3685 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 DCHS1Q96JQ0 3298 aa9.88□□□□□ -0.83
CD44-232ENST00000531118 ZNF532Q9HCE3 1301 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 MYL3P08590 195 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 OAZ1P54368 228 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 COL19A1Q14993 1142 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 LRRFIP1Q32MZ4 808 aaKnown RBP9.87□□□□□ -0.83
CD44-232ENST00000531118 CNKSR3Q6P9H4 555 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 EEPD1Q7L9B9 569 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 BMP8AQ7Z5Y6 402 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 PRPF38AQ8NAV1 312 aaKnown RBP9.87□□□□□ -0.83
CD44-232ENST00000531118 PPP1R13LQ8WUF5 828 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 KIFC2Q96AC6 838 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 RAD9AQ99638 391 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 C17orf80Q9BSJ5 609 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 MTG1Q9BT17 334 aaPredicted RBP9.87□□□□□ -0.83
CD44-232ENST00000531118 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.87□□□□□ -0.83
CD44-232ENST00000531118 ARMT1Q9H993 441 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 ALG13Q9NP73 1137 aaKnown RBP9.87□□□□□ -0.83
CD44-232ENST00000531118 VTA1Q9NP79 307 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 RNF146Q9NTX7 359 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 COG6Q9Y2V7 657 aa9.87□□□□□ -0.83
CD44-232ENST00000531118 ZBED9Q6R2W3 1325 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 TPRP12270 2363 aaKnown RBP9.86□□□□□ -0.83
CD44-232ENST00000531118 TCRBV5S4A2TA0A5A2 114 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 TMEM221A6NGB7 291 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 M0R296 226 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 PRKAB2O43741 272 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 CPT1AP50416 773 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 SLFN5Q08AF3 891 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 PTPROQ16827 1216 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 TCTN1Q2MV58 587 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 NBPF20Q3BBV1 942 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 TCEAL5Q5H9L2 206 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 SLC9C2Q5TAH2 1124 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 C12orf60Q5U649 245 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 NFRKBQ6P4R8 1299 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 RPAINQ86UA6 219 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 SUGP1Q8IWZ8 645 aaKnown RBP9.86□□□□□ -0.83
CD44-232ENST00000531118 CCDC155Q8N6L0 562 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 CAGE1Q8TC20 777 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 AFAP1L1Q8TED9 768 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 EAF2Q96CJ1 260 aaPredicted RBP9.86□□□□□ -0.83
CD44-232ENST00000531118 CRBNQ96SW2 442 aa9.86□□□□□ -0.83
CD44-232ENST00000531118 POP1Q99575 1024 aaKnown RBP9.86□□□□□ -0.83
CD44-232ENST00000531118 KIAA1468Q9P260 1216 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms