RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	C2orf27A	Q580R0	203 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	UTP14C	Q5TAP6	766 aa	Known RBP	7.17	□□□□□ -1.26
CD44-231	ENST00000531110	PPIL6	Q8IXY8	311 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	POU5F2	Q8N7G0	328 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	7.17	□□□□□ -1.26
CD44-231	ENST00000531110	LIN37	Q96GY3	246 aa	Predicted RBP	7.17	□□□□□ -1.26
CD44-231	ENST00000531110	PSMD1	Q99460	953 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	DNAJC7	Q99615	494 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	ZNF552	Q9H707	407 aa	Predicted RBP	7.17	□□□□□ -1.26
CD44-231	ENST00000531110	ZSWIM4	Q9H7M6	989 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	GPR27	Q9NS67	375 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	7.17	□□□□□ -1.26
CD44-231	ENST00000531110	KDM2B	Q8NHM5	1336 aa		7.17	□□□□□ -1.26
CD44-231	ENST00000531110	LRRC10B	A6NIK2	292 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	PRODH	O43272	600 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	MYO1B	O43795	1136 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	CYBB	P04839	570 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	MPO	P05164	745 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	SUMO1	P63165	101 aa	Known RBP	7.16	□□□□□ -1.26
CD44-231	ENST00000531110	YBX1	P67809	324 aa	Known RBP	7.16	□□□□□ -1.26
CD44-231	ENST00000531110	BMS1	Q14692	1282 aa	Known RBP	7.16	□□□□□ -1.26
CD44-231	ENST00000531110	CCDC103	Q8IW40	242 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	NETO2	Q8NC67	525 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	ZSWIM2	Q8NEG5	633 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	DCAF4	Q8WV16	495 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	MTA3	Q9BTC8	594 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	PFDN2	Q9UHV9	154 aa		7.16	□□□□□ -1.26
CD44-231	ENST00000531110	LAS1L	Q9Y4W2	734 aa	Known RBP	7.16	□□□□□ -1.26
CD44-231	ENST00000531110	HSP90AA1	P07900	732 aa	Known RBP	7.15	□□□□□ -1.26
CD44-231	ENST00000531110	RPL11	P62913	178 aa	Known RBP	7.15	□□□□□ -1.26
CD44-231	ENST00000531110	SLC20A2	Q08357	652 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	PRSS53	Q2L4Q9	553 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	MBLAC2	Q68D91	279 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	DENND5A	Q6IQ26	1287 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	STYK1	Q6J9G0	422 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	PAQR3	Q6TCH7	311 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	CABP7	Q86V35	215 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	CPNE8	Q86YQ8	564 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	RIOX2	Q8IUF8	465 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	LZTR1	Q8N653	840 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	SECISBP2L	Q93073	1101 aa	Known RBP	7.15	□□□□□ -1.26
CD44-231	ENST00000531110	IPO9	Q96P70	1041 aa	Known RBP	7.15	□□□□□ -1.26
CD44-231	ENST00000531110	EPB41L4B	Q9H329	900 aa		7.15	□□□□□ -1.26
CD44-231	ENST00000531110	TIMM13	Q9Y5L4	95 aa	Predicted RBP	7.15	□□□□□ -1.26
CD44-231	ENST00000531110	TRBV23-1	A0A0A0MS06	115 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	ARNTL	O00327	626 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	FAM153B	P0C7A2	387 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	MSL3P1	P0C860	447 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	GLI4	P10075	376 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	TXK	P42681	527 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	ADGRF1	Q5T601	910 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	MAMDC2	Q7Z304	686 aa	Predicted RBP	7.14	□□□□□ -1.27
CD44-231	ENST00000531110	SMAP1	Q8IYB5	467 aa	Predicted RBP	7.14	□□□□□ -1.27
CD44-231	ENST00000531110	FBXO15	Q8NCQ5	510 aa	Predicted RBP	7.14	□□□□□ -1.27
CD44-231	ENST00000531110	KISS1R	Q969F8	398 aa	Predicted RBP	7.14	□□□□□ -1.27
CD44-231	ENST00000531110	CDC6	Q99741	560 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	DHRS4	Q9BTZ2	278 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110	TMEFF2	Q9UIK5	374 aa	Predicted RBP	7.14	□□□□□ -1.27
CD44-231	ENST00000531110		X6R8D5	127 aa		7.14	□□□□□ -1.27
CD44-231	ENST00000531110		A0A1W2PQJ5	194 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110		H7BY64	318 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	SEMA7A	O75326	666 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	FARP2	O94887	1054 aa	Predicted RBP	7.13	□□□□□ -1.27
CD44-231	ENST00000531110	DBH	P09172	617 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	PDE6B	P35913	854 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	MAPKAPK2	P49137	400 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	INF2	Q27J81	1249 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	YOD1	Q5VVQ6	348 aa	Predicted RBP	7.13	□□□□□ -1.27
CD44-231	ENST00000531110	PRR23B	Q6ZRT6	265 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	NOP9	Q86U38	636 aa	Known RBP	7.13	□□□□□ -1.27
CD44-231	ENST00000531110	RCBTB1	Q8NDN9	531 aa		7.13	□□□□□ -1.27
CD44-231	ENST00000531110	NSUN3	Q9H649	340 aa	Known RBP	7.13	□□□□□ -1.27
CD44-231	ENST00000531110	DCP1A	Q9NPI6	582 aa	Predicted RBP	7.13	□□□□□ -1.27
CD44-231	ENST00000531110	MAFG	O15525	162 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	NAT1	P18440	290 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	SLC6A11	P48066	632 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	MESP2	Q0VG99	397 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	LSAMP	Q13449	338 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	KIR3DS1	Q14943	382 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	NTRK3	Q16288	839 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	MLANA	Q16655	118 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	MROH9	Q5TGP6	573 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	MTERF4	Q7Z6M4	381 aa	Known RBP	7.12	□□□□□ -1.27
CD44-231	ENST00000531110	SIRT2	Q8IXJ6	389 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	LILRB2	Q8N423	598 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	7.12	□□□□□ -1.27
CD44-231	ENST00000531110	PLEKHO2	Q8TD55	490 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	DPF3	Q92784	378 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	PTPRN2	Q92932	1015 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	FAM84A	Q96KN4	292 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	EXOC2	Q96KP1	924 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	GULP1	Q9UBP9	304 aa		7.12	□□□□□ -1.27
CD44-231	ENST00000531110	MRPS23	Q9Y3D9	190 aa	Known RBP	7.12	□□□□□ -1.27
CD44-231	ENST00000531110	TEX51	A0A1B0GUA7	166 aa		7.11	□□□□□ -1.27
CD44-231	ENST00000531110	PPP1R11	O60927	126 aa	Predicted RBP	7.11	□□□□□ -1.27
CD44-231	ENST00000531110	GPR85	P60893	370 aa		7.11	□□□□□ -1.27
CD44-231	ENST00000531110	GABRE	P78334	506 aa		7.11	□□□□□ -1.27
CD44-231	ENST00000531110	BICRAL	Q6AI39	1079 aa		7.11	□□□□□ -1.27
CD44-231	ENST00000531110	WWC2	Q6AWC2	1192 aa		7.11	□□□□□ -1.27
CD44-231	ENST00000531110	OGFOD2	Q6N063	350 aa		7.11	□□□□□ -1.27

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