RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TARSL2A2RTX5 802 aaKnown RBP21.44■■□□□ 1.02
VPS28-213ENST00000530983 MYMKA6NI61 221 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 EPHB6O15197 1021 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 HNRNPH3P31942 346 aaKnown RBP21.44■■□□□ 1.02
VPS28-213ENST00000530983 ORC2Q13416 577 aaPredicted RBP21.44■■□□□ 1.02
VPS28-213ENST00000530983 KRT26Q7Z3Y9 468 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 TEX11Q8IYF3 940 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 GOLGA5Q8TBA6 731 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 VIPAS39Q9H9C1 493 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 LRWD1Q9UFC0 647 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 PLAGL2Q9UPG8 496 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 SIK3Q9Y2K2 1263 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 ESYT2A0FGR8 921 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 IDEP14735 1019 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 KIF5AQ12840 1032 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 HSP90B2PQ58FF3 399 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 SV2BQ7L1I2 683 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 SECISBP2LQ93073 1101 aaKnown RBP21.44■■□□□ 1.02
VPS28-213ENST00000530983 CCDC42Q96M95 316 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 PNMA5Q96PV4 448 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 UBA5Q9GZZ9 404 aa21.44■■□□□ 1.02
VPS28-213ENST00000530983 USP17L5A8MUK1 530 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 PHACTR2O75167 634 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 MCM3P25205 808 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 NOVP48745 357 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 C15orf52Q6ZUT6 534 aaKnown RBP21.43■■□□□ 1.02
VPS28-213ENST00000530983 ACBD3Q9H3P7 528 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 MED4Q9NPJ6 270 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 ARHGAP20Q9P2F6 1191 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 EDIL3O43854 480 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 ACTN2P35609 894 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 VPS72Q15906 364 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 VWA3BQ502W6 1294 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 UNC13DQ70J99 1090 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 CERS3Q8IU89 383 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 IQCDQ96DY2 449 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 NDST4Q9H3R1 872 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 RIOX1Q9H6W3 641 aa21.43■■□□□ 1.02
VPS28-213ENST00000530983 TRIM66O15016 1216 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 SLC37A4O43826 429 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 AARSP49588 968 aaKnown RBP eCLIP21.42■■□□□ 1.021e-6■■■■■ 36.1
VPS28-213ENST00000530983 FXR2P51116 673 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS28-213ENST00000530983 CALCRLQ16602 461 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 SMCR8Q8TEV9 937 aaPredicted RBP21.42■■□□□ 1.02
VPS28-213ENST00000530983 TSGA10Q9BZW7 698 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 JADE2Q9NQC1 790 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 STK17AQ9UEE5 414 aa21.42■■□□□ 1.02
VPS28-213ENST00000530983 MYH10P35580 1976 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 PVALEFA0A1B0GWK0 134 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 MYO1CO00159 1063 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 RHBDL3P58872 404 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 SPA17Q15506 151 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 MAP9Q49MG5 647 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 PLCD3Q8N3E9 789 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 CAGE1Q8TC20 777 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 LARP4BQ92615 738 aaKnown RBP21.41■■□□□ 1.02
VPS28-213ENST00000530983 RASSF4Q9H2L5 321 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 CD209Q9NNX6 404 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 FAM207AQ9NSI2 230 aaPredicted RBP21.41■■□□□ 1.02
VPS28-213ENST00000530983 NHSQ6T4R5 1651 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 ZMYND10O75800 440 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 GPSM2P81274 684 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 CCDC96Q2M329 555 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 DYMQ7RTS9 669 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 C2CD5Q86YS7 1000 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 CCNL1Q9UK58 526 aaPredicted RBP21.41■■□□□ 1.02
VPS28-213ENST00000530983 HPCAL4Q9UM19 191 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 CAPN6Q9Y6Q1 641 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 TAF1LQ8IZX4 1826 aa21.41■■□□□ 1.02
VPS28-213ENST00000530983 ZC3H4Q9UPT8 1303 aaKnown RBP21.41■■□□□ 1.02
VPS28-213ENST00000530983 TDP2O95551 362 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 SYF2O95926 243 aaKnown RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 PDHBP11177 359 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 IFIH1Q9BYX4 1025 aaKnown RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 SH2D4AQ9H788 454 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 FOCADQ5VW36 1801 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 POTEMA6NI47 508 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 MYBL2P10244 700 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 TNNT3P45378 269 aaPredicted RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 MAN2A1Q16706 1144 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 C10orf67Q8IYJ2 551 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 FNBP4Q8N3X1 1017 aaPredicted RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 GUF1Q8N442 669 aaKnown RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 COG1Q8WTW3 980 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 SNX12Q9UMY4 172 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 PCDHA13Q9Y5I0 950 aa21.4■■□□□ 1.02
VPS28-213ENST00000530983 FRMPD2Q68DX3 1309 aaPredicted RBP21.4■■□□□ 1.02
VPS28-213ENST00000530983 ABCB11O95342 1321 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 LCA5LO95447 670 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 KIF11P52732 1056 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 C2orf54Q08AI8 447 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 TRIM58Q8NG06 486 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 COA7Q96BR5 231 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 NUDT12Q9BQG2 462 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 CWC15Q9P013 229 aaKnown RBP21.39■■□□□ 1.02
VPS28-213ENST00000530983 JRKLQ9Y4A0 524 aa21.39■■□□□ 1.02
VPS28-213ENST00000530983 hCG_1984214I3L0E3 225 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 LRRC55Q6ZSA7 311 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 CREG2Q8IUH2 290 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 ZNF713Q8N859 430 aaPredicted RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms